Zinc in PDB 1wfx: Crystal Structure of APE0204 From Aeropyrum Pernix

The structure of Crystal Structure of APE0204 From Aeropyrum Pernix, PDB code: 1wfx was solved by M.Kato-Murayama, Y.Bessho, M.Shirouzu, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.07 / 2.80
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	102.667, 102.667, 101.489, 90.00, 90.00, 120.00
R / Rfree (%)	22 / 28.6

The structure of Crystal Structure of APE0204 From Aeropyrum Pernix also contains other interesting chemical elements:

Chlorine

(Cl)

5 atoms

The binding sites of Zinc atom in the Crystal Structure of APE0204 From Aeropyrum Pernix (pdb code 1wfx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of APE0204 From Aeropyrum Pernix, PDB code: 1wfx:

Zinc binding site 1 out of 1 in the Crystal Structure of APE0204 From Aeropyrum Pernix


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of APE0204 From Aeropyrum Pernix within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:41.0 occ:0.33 O A:HOH316 2.1 8.1 0.3 NE2 A:HIS58 2.2 23.4 1.0 CD2 A:HIS58 3.0 22.2 1.0 CE1 A:HIS58 3.2 24.1 1.0 CG A:HIS58 4.1 20.7 1.0 ND1 A:HIS58 4.2 22.2 1.0 CA A:GLY54 4.3 21.3 1.0

M.Kato-Murayama, Y.Bessho, M.Shirouzu, S.Yokoyama. Crystal Structure of the Rna 2'-Phosphotransferase From Aeropyrum Pernix K1 J.Mol.Biol. V. 348 295 2005.
ISSN: ISSN 0022-2836
PubMed: 15811369
DOI: 10.1016/J.JMB.2005.02.049