Zinc in PDB 1wfk: Fyve Domain of Fyve Domain Containing 19 Protein From Mus Musculus

The binding sites of Zinc atom in the Fyve Domain of Fyve Domain Containing 19 Protein From Mus Musculus (pdb code 1wfk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Fyve Domain of Fyve Domain Containing 19 Protein From Mus Musculus, PDB code: 1wfk:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Fyve Domain of Fyve Domain Containing 19 Protein From Mus Musculus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Fyve Domain of Fyve Domain Containing 19 Protein From Mus Musculus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn200 b:0.0 occ:1.00 SG A:CYS15 2.3 0.0 1.0 SG A:CYS39 2.3 0.0 1.0 SG A:CYS36 2.3 0.0 1.0 SG A:CYS12 2.3 0.0 1.0 HB2 A:CYS39 3.0 0.0 1.0 H A:CYS36 3.1 0.0 1.0 H A:CYS15 3.1 0.0 1.0 CB A:CYS39 3.2 0.0 1.0 HB3 A:CYS12 3.3 0.0 1.0 CB A:CYS12 3.3 0.0 1.0 HG13 A:VAL17 3.3 0.0 1.0 HB2 A:CYS12 3.4 0.0 1.0 H A:CYS39 3.5 0.0 1.0 HB3 A:CYS36 3.5 0.0 1.0 HB3 A:CYS15 3.5 0.0 1.0 CB A:CYS15 3.5 0.0 1.0 CB A:CYS36 3.5 0.0 1.0 HG12 A:VAL17 3.6 0.0 1.0 N A:CYS15 3.7 0.0 1.0 N A:CYS36 3.9 0.0 1.0 CG1 A:VAL17 4.0 0.0 1.0 HB3 A:CYS39 4.0 0.0 1.0 HA3 A:GLY14 4.1 0.0 1.0 N A:CYS39 4.1 0.0 1.0 H A:GLY14 4.1 0.0 1.0 CA A:CYS15 4.2 0.0 1.0 HD1 A:PHE35 4.2 0.0 1.0 H A:VAL17 4.2 0.0 1.0 CA A:CYS39 4.3 0.0 1.0 CA A:CYS36 4.3 0.0 1.0 HB2 A:CYS36 4.4 0.0 1.0 HB2 A:CYS15 4.4 0.0 1.0 C A:GLY14 4.4 0.0 1.0 H A:ALA16 4.5 0.0 1.0 O A:CYS36 4.5 0.0 1.0 HB A:VAL17 4.5 0.0 1.0 CA A:GLY14 4.6 0.0 1.0 HA A:PHE35 4.6 0.0 1.0 HE3 A:LYS23 4.7 0.0 1.0 N A:GLY14 4.7 0.0 1.0 CA A:CYS12 4.7 0.0 1.0 HA A:CYS39 4.7 0.0 1.0 HG11 A:VAL17 4.7 0.0 1.0 HB3 A:PHE35 4.8 0.0 1.0 C A:CYS36 4.8 0.0 1.0 CB A:VAL17 4.9 0.0 1.0 C A:CYS15 5.0 0.0 1.0 N A:ALA16 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Fyve Domain of Fyve Domain Containing 19 Protein From Mus Musculus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Fyve Domain of Fyve Domain Containing 19 Protein From Mus Musculus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn400 b:0.0 occ:1.00 SG A:CYS57 2.2 0.0 1.0 SG A:CYS28 2.3 0.0 1.0 SG A:CYS31 2.4 0.0 1.0 SG A:CYS60 2.4 0.0 1.0 H A:CYS57 2.8 0.0 1.0 HB2 A:CYS60 2.9 0.0 1.0 H A:CYS31 3.0 0.0 1.0 HE2 A:PHE35 3.0 0.0 1.0 HB3 A:CYS31 3.2 0.0 1.0 CB A:CYS28 3.2 0.0 1.0 CB A:CYS60 3.2 0.0 1.0 HB2 A:CYS28 3.2 0.0 1.0 HB3 A:CYS28 3.3 0.0 1.0 CB A:CYS31 3.4 0.0 1.0 CB A:CYS57 3.6 0.0 1.0 HB3 A:CYS57 3.6 0.0 1.0 HB3 A:ASN30 3.7 0.0 1.0 N A:CYS57 3.7 0.0 1.0 HB A:VAL56 3.7 0.0 1.0 CE2 A:PHE35 3.7 0.0 1.0 H A:CYS60 3.7 0.0 1.0 N A:CYS31 3.8 0.0 1.0 HB3 A:CYS60 3.8 0.0 1.0 H A:GLY32 3.9 0.0 1.0 HZ A:PHE35 4.2 0.0 1.0 CA A:CYS57 4.2 0.0 1.0 CA A:CYS31 4.2 0.0 1.0 H A:ARG33 4.2 0.0 1.0 HB2 A:CYS31 4.3 0.0 1.0 CZ A:PHE35 4.3 0.0 1.0 HD21 A:ASN30 4.4 0.0 1.0 HB2 A:CYS57 4.4 0.0 1.0 CA A:CYS60 4.4 0.0 1.0 N A:CYS60 4.4 0.0 1.0 HA A:VAL56 4.5 0.0 1.0 CD2 A:PHE35 4.5 0.0 1.0 HB2 A:ARG33 4.5 0.0 1.0 H A:ASN30 4.5 0.0 1.0 HD2 A:PHE35 4.6 0.0 1.0 O A:CYS57 4.6 0.0 1.0 HD2 A:ARG33 4.6 0.0 1.0 N A:GLY32 4.6 0.0 1.0 CA A:CYS28 4.7 0.0 1.0 CB A:VAL56 4.7 0.0 1.0 H A:LYS29 4.7 0.0 1.0 CB A:ASN30 4.7 0.0 1.0 HB3 A:GLN59 4.7 0.0 1.0 HG13 A:VAL56 4.7 0.0 1.0 C A:VAL56 4.8 0.0 1.0 C A:CYS57 4.8 0.0 1.0 HA A:CYS60 4.9 0.0 1.0 C A:CYS31 4.9 0.0 1.0 HA A:CYS28 4.9 0.0 1.0 CA A:VAL56 4.9 0.0 1.0 C A:ASN30 5.0 0.0 1.0

T.Nagashima, F.Hayashi, S.Yokoyama. Fyve Domain of Fyve Domain Containing 19 Protein From Mus Musculus To Be Published.