Zinc in PDB 1wee: Solution Structure of Phd Domain in Phd Finger Family Protein
Zinc Binding Sites:
The binding sites of Zinc atom in the Solution Structure of Phd Domain in Phd Finger Family Protein
(pdb code 1wee). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Solution Structure of Phd Domain in Phd Finger Family Protein, PDB code: 1wee:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 1wee
Go back to
Zinc Binding Sites List in 1wee
Zinc binding site 1 out
of 2 in the Solution Structure of Phd Domain in Phd Finger Family Protein
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Solution Structure of Phd Domain in Phd Finger Family Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn201
b:0.0
occ:1.00
|
SG
|
A:CYS21
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS45
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS19
|
2.3
|
0.0
|
1.0
|
ND1
|
A:HIS42
|
2.4
|
0.0
|
1.0
|
HB2
|
A:HIS42
|
2.7
|
0.0
|
1.0
|
HB2
|
A:CYS21
|
3.2
|
0.0
|
1.0
|
CG
|
A:HIS42
|
3.2
|
0.0
|
1.0
|
H
|
A:CYS21
|
3.3
|
0.0
|
1.0
|
HB3
|
A:CYS19
|
3.4
|
0.0
|
1.0
|
CE1
|
A:HIS42
|
3.4
|
0.0
|
1.0
|
CB
|
A:HIS42
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS21
|
3.4
|
0.0
|
1.0
|
HB2
|
A:CYS45
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS19
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS45
|
3.5
|
0.0
|
1.0
|
HG2
|
A:LYS20
|
3.6
|
0.0
|
1.0
|
HE1
|
A:HIS42
|
3.6
|
0.0
|
1.0
|
HB3
|
A:CYS45
|
3.8
|
0.0
|
1.0
|
HB3
|
A:HIS42
|
3.8
|
0.0
|
1.0
|
HB2
|
A:CYS19
|
3.9
|
0.0
|
1.0
|
N
|
A:CYS21
|
4.1
|
0.0
|
1.0
|
H
|
A:HIS42
|
4.1
|
0.0
|
1.0
|
HB3
|
A:CYS21
|
4.2
|
0.0
|
1.0
|
CA
|
A:CYS21
|
4.4
|
0.0
|
1.0
|
CD2
|
A:HIS42
|
4.4
|
0.0
|
1.0
|
NE2
|
A:HIS42
|
4.5
|
0.0
|
1.0
|
CG
|
A:LYS20
|
4.6
|
0.0
|
1.0
|
H
|
A:LYS20
|
4.6
|
0.0
|
1.0
|
HG3
|
A:LYS20
|
4.6
|
0.0
|
1.0
|
H
|
A:CYS45
|
4.7
|
0.0
|
1.0
|
CA
|
A:HIS42
|
4.7
|
0.0
|
1.0
|
HD3
|
A:LYS20
|
4.8
|
0.0
|
1.0
|
CA
|
A:CYS19
|
4.8
|
0.0
|
1.0
|
N
|
A:HIS42
|
4.8
|
0.0
|
1.0
|
N
|
A:LYS20
|
4.8
|
0.0
|
1.0
|
CA
|
A:CYS45
|
4.9
|
0.0
|
1.0
|
C
|
A:CYS19
|
4.9
|
0.0
|
1.0
|
H
|
A:GLY22
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS21
|
4.9
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 1wee
Go back to
Zinc Binding Sites List in 1wee
Zinc binding site 2 out
of 2 in the Solution Structure of Phd Domain in Phd Finger Family Protein
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Solution Structure of Phd Domain in Phd Finger Family Protein within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn401
b:0.0
occ:1.00
|
SG
|
A:CYS60
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS63
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS37
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS34
|
2.3
|
0.0
|
1.0
|
H
|
A:CYS37
|
2.6
|
0.0
|
1.0
|
H
|
A:CYS60
|
2.7
|
0.0
|
1.0
|
HB2
|
A:CYS63
|
3.2
|
0.0
|
1.0
|
HB3
|
A:CYS60
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS63
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS34
|
3.4
|
0.0
|
1.0
|
N
|
A:CYS37
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS60
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS37
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS37
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS34
|
3.5
|
0.0
|
1.0
|
N
|
A:CYS60
|
3.6
|
0.0
|
1.0
|
HA3
|
A:GLY36
|
3.6
|
0.0
|
1.0
|
H
|
A:CYS63
|
3.7
|
0.0
|
1.0
|
HB2
|
A:CYS34
|
3.8
|
0.0
|
1.0
|
H
|
A:GLY38
|
4.0
|
0.0
|
1.0
|
CA
|
A:CYS37
|
4.1
|
0.0
|
1.0
|
CA
|
A:CYS60
|
4.1
|
0.0
|
1.0
|
HA
|
A:LEU59
|
4.1
|
0.0
|
1.0
|
N
|
A:CYS63
|
4.1
|
0.0
|
1.0
|
HB3
|
A:CYS63
|
4.2
|
0.0
|
1.0
|
HB2
|
A:ARG62
|
4.2
|
0.0
|
1.0
|
HD23
|
A:LEU59
|
4.2
|
0.0
|
1.0
|
CA
|
A:CYS63
|
4.2
|
0.0
|
1.0
|
C
|
A:GLY36
|
4.3
|
0.0
|
1.0
|
HB2
|
A:CYS60
|
4.4
|
0.0
|
1.0
|
CA
|
A:GLY36
|
4.4
|
0.0
|
1.0
|
HB2
|
A:CYS37
|
4.4
|
0.0
|
1.0
|
HA
|
A:CYS63
|
4.4
|
0.0
|
1.0
|
HD21
|
A:LEU59
|
4.5
|
0.0
|
1.0
|
H
|
A:GLY36
|
4.5
|
0.0
|
1.0
|
O
|
A:CYS34
|
4.6
|
0.0
|
1.0
|
HD12
|
A:LEU66
|
4.7
|
0.0
|
1.0
|
C
|
A:LEU59
|
4.7
|
0.0
|
1.0
|
C
|
A:CYS60
|
4.7
|
0.0
|
1.0
|
N
|
A:GLY36
|
4.8
|
0.0
|
1.0
|
O
|
A:CYS60
|
4.8
|
0.0
|
1.0
|
H
|
A:VAL39
|
4.8
|
0.0
|
1.0
|
N
|
A:GLY38
|
4.8
|
0.0
|
1.0
|
CA
|
A:CYS34
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS37
|
4.8
|
0.0
|
1.0
|
CA
|
A:LEU59
|
4.9
|
0.0
|
1.0
|
CD2
|
A:LEU59
|
4.9
|
0.0
|
1.0
|
HB
|
A:VAL39
|
4.9
|
0.0
|
1.0
|
HB3
|
A:LEU59
|
5.0
|
0.0
|
1.0
|
C
|
A:CYS34
|
5.0
|
0.0
|
1.0
|
|
Reference:
F.He,
Y.Muto,
M.Inoue,
T.Kigawa,
M.Shirouzu,
T.Terada,
S.Yokoyama.
Solution Structure of Phd Domain in Phd Finger Family Protein To Be Published.
Page generated: Wed Oct 16 19:58:56 2024
|