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Zinc in PDB 1w31: Yeast 5-Aminolaevulinic Acid Dehydratase 5-Hydroxylaevulinic Acid Complex

Enzymatic activity of Yeast 5-Aminolaevulinic Acid Dehydratase 5-Hydroxylaevulinic Acid Complex

All present enzymatic activity of Yeast 5-Aminolaevulinic Acid Dehydratase 5-Hydroxylaevulinic Acid Complex:
4.2.1.24;

Protein crystallography data

The structure of Yeast 5-Aminolaevulinic Acid Dehydratase 5-Hydroxylaevulinic Acid Complex, PDB code: 1w31 was solved by P.T.Erskine, L.Coates, R.Newbold, A.A.Brindley, F.Stauffer, G.D.E.Beaven, R.Gill, S.P.Wood, M.J.Warren, J.B.Cooper, P.M.Shoolingin-Jordan, R.Neier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.28 / 1.90
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 102.570, 102.570, 168.380, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Zinc Binding Sites:

The binding sites of Zinc atom in the Yeast 5-Aminolaevulinic Acid Dehydratase 5-Hydroxylaevulinic Acid Complex (pdb code 1w31). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Yeast 5-Aminolaevulinic Acid Dehydratase 5-Hydroxylaevulinic Acid Complex, PDB code: 1w31:

Zinc binding site 1 out of 1 in 1w31

Go back to Zinc Binding Sites List in 1w31
Zinc binding site 1 out of 1 in the Yeast 5-Aminolaevulinic Acid Dehydratase 5-Hydroxylaevulinic Acid Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Yeast 5-Aminolaevulinic Acid Dehydratase 5-Hydroxylaevulinic Acid Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn400

b:53.4
occ:1.00
O A:HOH2269 2.0 56.9 1.0
SG A:CYS133 2.3 40.1 1.0
SG A:CYS143 2.3 46.9 1.0
SG A:CYS135 2.3 55.5 1.0
CB A:CYS135 3.0 39.8 1.0
CB A:CYS143 3.2 62.2 1.0
CB A:CYS133 3.2 35.8 1.0
O A:HOH2156 3.7 48.3 1.0
CA A:CYS143 3.8 69.0 1.0
N A:CYS135 3.9 41.9 1.0
CA A:CYS135 4.0 43.2 1.0
NH1 A:ARG232 4.1 0.0 1.0
O A:HOH2180 4.2 58.1 1.0
OG A:SER179 4.2 37.0 1.0
O A:SER179 4.4 42.1 1.0
N A:CYS143 4.5 46.1 1.0
O A:HOH2160 4.5 47.3 1.0
CA A:CYS133 4.6 37.9 1.0
N A:LEU134 4.6 37.4 1.0
O A:HOH2200 4.8 59.2 1.0
C A:SER179 4.9 38.5 1.0
CA A:ASP180 4.9 40.5 1.0
C A:CYS143 4.9 66.3 1.0
C A:CYS133 5.0 35.6 1.0

Reference:

P.T.Erskine, L.Coates, R.Newbold, A.A.Brindley, F.Stauffer, G.D.E.Beaven, R.Gill, A.Coker, S.P.Wood, M.J.Warren, P.M.Shoolingin-Jordan, R.Neier, J.B.Cooper. Structure of Yeast 5-Aminolaevulinic Acid Dehydratase Complexed with the Inhibitor 5-Hydroxylaevulinic Acid Acta Crystallogr.,Sect.D V. 61 1222 2005.
ISSN: ISSN 0907-4449
PubMed: 16131755
DOI: 10.1107/S0907444905018834
Page generated: Wed Dec 16 03:08:18 2020

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