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Zinc in PDB 1vsr: Very Short Patch Repair (Vsr) Endonuclease From Escherichia Coli

Protein crystallography data

The structure of Very Short Patch Repair (Vsr) Endonuclease From Escherichia Coli, PDB code: 1vsr was solved by S.E.Tsutakawa, T.Muto, H.Jingami, N.Kunishima, M.Ariyoshi, D.Kohda, M.Nakagawa, K.Morikawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 35.020, 54.240, 73.520, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 21.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Very Short Patch Repair (Vsr) Endonuclease From Escherichia Coli (pdb code 1vsr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Very Short Patch Repair (Vsr) Endonuclease From Escherichia Coli, PDB code: 1vsr:

Zinc binding site 1 out of 1 in 1vsr

Go back to Zinc Binding Sites List in 1vsr
Zinc binding site 1 out of 1 in the Very Short Patch Repair (Vsr) Endonuclease From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Very Short Patch Repair (Vsr) Endonuclease From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:17.6
occ:1.00
ND1 A:HIS71 2.2 16.7 1.0
SG A:CYS66 2.3 18.3 1.0
SG A:CYS73 2.3 19.1 1.0
SG A:CYS117 2.3 17.0 1.0
CB A:CYS117 3.1 17.5 1.0
CE1 A:HIS71 3.1 17.8 1.0
CG A:HIS71 3.2 15.5 1.0
CB A:CYS73 3.2 22.0 1.0
CB A:CYS66 3.4 15.5 1.0
CB A:HIS71 3.5 17.1 1.0
N A:CYS117 4.1 16.2 1.0
CA A:CYS117 4.2 16.2 1.0
CB A:TRP115 4.2 11.3 1.0
NE2 A:HIS71 4.3 17.1 1.0
CD2 A:HIS71 4.3 15.9 1.0
O A:HOH255 4.4 32.3 1.0
CA A:CYS66 4.5 14.1 1.0
CA A:CYS73 4.5 24.1 1.0
N A:CYS73 4.5 21.7 1.0
CE3 A:TRP115 4.7 13.7 1.0
CD1 A:LEU75 4.7 27.0 1.0
CG A:TRP115 4.8 12.2 1.0
CD2 A:TRP115 4.9 14.1 1.0
CA A:HIS71 4.9 15.6 1.0
CB A:LEU75 5.0 29.2 1.0
N A:GLU116 5.0 14.0 1.0

Reference:

S.E.Tsutakawa, T.Muto, T.Kawate, H.Jingami, N.Kunishima, M.Ariyoshi, D.Kohda, M.Nakagawa, K.Morikawa. Crystallographic and Functional Studies of Very Short Patch Repair Endonuclease. Mol.Cell V. 3 621 1999.
ISSN: ISSN 1097-2765
PubMed: 10360178
DOI: 10.1016/S1097-2765(00)80355-X
Page generated: Fri Sep 25 23:56:14 2020
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