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Zinc in PDB 1vrq: Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Folinic Acid

Enzymatic activity of Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Folinic Acid

All present enzymatic activity of Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Folinic Acid:
1.5.3.1;

Protein crystallography data

The structure of Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Folinic Acid, PDB code: 1vrq was solved by K.Ida, T.Moriguchi, H.Suzuki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 99.50 / 2.20
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 199.402, 199.402, 197.309, 90.00, 90.00, 120.00
R / Rfree (%) 19.2 / 22.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Folinic Acid (pdb code 1vrq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Folinic Acid, PDB code: 1vrq:

Zinc binding site 1 out of 1 in 1vrq

Go back to Zinc Binding Sites List in 1vrq
Zinc binding site 1 out of 1 in the Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Folinic Acid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Folinic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1006

b:22.4
occ:1.00
ND1 D:HIS59 2.2 17.1 1.0
SG D:CYS9 2.4 19.3 1.0
SG D:CYS63 2.4 21.3 1.0
SG D:CYS6 2.4 20.6 1.0
CG D:HIS59 3.2 19.5 1.0
CE1 D:HIS59 3.2 19.8 1.0
CB D:CYS63 3.3 19.2 1.0
CB D:CYS9 3.4 16.3 1.0
CB D:HIS59 3.4 18.9 1.0
CB D:CYS6 3.5 16.6 1.0
N D:CYS9 3.7 19.9 1.0
N D:CYS63 3.7 20.3 1.0
CB D:ASN8 4.0 20.1 1.0
CA D:CYS63 4.1 19.0 1.0
CA D:CYS9 4.2 18.5 1.0
NE2 D:HIS59 4.3 15.3 1.0
CD2 D:HIS59 4.3 17.0 1.0
ND2 D:ASN8 4.5 15.4 1.0
C D:ASN8 4.5 20.2 1.0
CA D:ASN8 4.7 21.5 1.0
O C:HOH3091 4.7 17.7 1.0
N D:ASN8 4.8 22.0 1.0
C D:GLY62 4.8 19.1 1.0
CG D:ASN8 4.8 22.6 1.0
CA D:CYS6 4.9 20.5 1.0
C D:CYS63 4.9 18.2 1.0
CA D:GLY62 5.0 19.3 1.0
CA D:HIS59 5.0 21.0 1.0

Reference:

K.Ida, T.Moriguchi, H.Suzuki. Crystal Structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 Biochem.Biophys.Res.Commun. V. 333 359 2005.
ISSN: ISSN 0006-291X
PubMed: 15946648
DOI: 10.1016/J.BBRC.2005.05.116
Page generated: Wed Dec 16 03:08:10 2020

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