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Zinc in PDB 1vhh: A Potential Catalytic Site Within the Amino-Terminal Signalling Domain of Sonic Hedgehog

Protein crystallography data

The structure of A Potential Catalytic Site Within the Amino-Terminal Signalling Domain of Sonic Hedgehog, PDB code: 1vhh was solved by T.M.T.Hall, J.A.Porter, P.A.Beachy, D.J.Leahy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.700, 79.000, 35.400, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 26.1

Zinc Binding Sites:

The binding sites of Zinc atom in the A Potential Catalytic Site Within the Amino-Terminal Signalling Domain of Sonic Hedgehog (pdb code 1vhh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the A Potential Catalytic Site Within the Amino-Terminal Signalling Domain of Sonic Hedgehog, PDB code: 1vhh:

Zinc binding site 1 out of 1 in 1vhh

Go back to Zinc Binding Sites List in 1vhh
Zinc binding site 1 out of 1 in the A Potential Catalytic Site Within the Amino-Terminal Signalling Domain of Sonic Hedgehog


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of A Potential Catalytic Site Within the Amino-Terminal Signalling Domain of Sonic Hedgehog within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn400

b:7.5
occ:1.00
HE2 A:HIS141 1.1 0.0 1.0
HD1 A:HIS183 1.2 0.0 1.0
OD1 A:ASP148 2.0 7.5 1.0
O A:HOH201 2.0 10.1 1.0
NE2 A:HIS141 2.1 2.2 1.0
ND1 A:HIS183 2.1 3.7 1.0
H1 A:HOH201 2.7 0.0 1.0
CG A:ASP148 2.7 9.1 1.0
H2 A:HOH201 2.8 0.0 1.0
OD2 A:ASP148 2.8 6.7 1.0
CE1 A:HIS183 3.0 8.6 1.0
CE1 A:HIS141 3.0 4.3 1.0
CD2 A:HIS141 3.0 6.9 1.0
CG A:HIS183 3.1 5.6 1.0
CB A:HIS183 3.5 2.0 1.0
OE1 A:GLU177 3.5 16.1 1.0
NE2 A:HIS183 4.1 3.6 1.0
ND1 A:HIS141 4.1 3.4 1.0
CB A:ASP148 4.2 7.8 1.0
CA A:HIS183 4.2 5.1 1.0
CG A:HIS141 4.2 2.0 1.0
HE2 A:HIS181 4.2 0.0 1.0
CD2 A:HIS183 4.2 4.7 1.0
O A:VAL147 4.4 3.8 1.0
CE1 A:HIS135 4.4 19.5 1.0
CD A:GLU177 4.6 14.8 1.0
CA A:ASP148 4.6 5.8 1.0
N A:ASP148 4.6 5.8 1.0
C A:VAL147 4.6 6.6 1.0
NE2 A:HIS181 4.7 17.8 1.0
H A:CYS184 4.8 0.0 1.0
ND1 A:HIS135 4.9 23.5 1.0
OE2 A:GLU177 4.9 22.9 1.0
CB A:ALA146 5.0 3.6 1.0
NE2 A:HIS135 5.0 15.7 1.0
O A:HOH315 5.0 20.1 1.0
HE2 A:HIS183 5.0 0.0 1.0

Reference:

T.M.Hall, J.A.Porter, P.A.Beachy, D.J.Leahy. A Potential Catalytic Site Revealed By the 1.7-A Crystal Structure of the Amino-Terminal Signalling Domain of Sonic Hedgehog. Nature V. 378 212 1995.
ISSN: ISSN 0028-0836
PubMed: 7477329
DOI: 10.1038/378212A0
Page generated: Fri Sep 25 23:54:52 2020
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