Zinc in PDB 1v47: Crystal Structure of Atp Sulfurylase From Thermus Thermophillus HB8 in Complex with Aps

All present enzymatic activity of Crystal Structure of Atp Sulfurylase From Thermus Thermophillus HB8 in Complex with Aps:
2.7.7.4;

The structure of Crystal Structure of Atp Sulfurylase From Thermus Thermophillus HB8 in Complex with Aps, PDB code: 1v47 was solved by Y.Taguchi, M.Sugishima, K.Fukuyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.49
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	68.858, 61.254, 128.665, 90.00, 95.43, 90.00
R / Rfree (%)	21.9 / 26.9

The structure of Crystal Structure of Atp Sulfurylase From Thermus Thermophillus HB8 in Complex with Aps also contains other interesting chemical elements:

Chlorine	(Cl)	5 atoms
Sodium	(Na)	4 atoms

The binding sites of Zinc atom in the Crystal Structure of Atp Sulfurylase From Thermus Thermophillus HB8 in Complex with Aps (pdb code 1v47). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Atp Sulfurylase From Thermus Thermophillus HB8 in Complex with Aps, PDB code: 1v47:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Atp Sulfurylase From Thermus Thermophillus HB8 in Complex with Aps


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Atp Sulfurylase From Thermus Thermophillus HB8 in Complex with Aps within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:50.1 occ:1.00 ND1 A:HIS310 2.1 50.9 1.0 SG A:CYS294 2.1 39.6 1.0 SG A:CYS306 2.2 37.1 1.0 SG A:CYS297 2.4 36.7 1.0 CG A:HIS310 3.0 50.4 1.0 CE1 A:HIS310 3.1 50.4 1.0 CB A:CYS294 3.2 39.0 1.0 CB A:HIS310 3.3 48.9 1.0 CB A:CYS297 3.4 37.3 1.0 CB A:CYS306 3.5 37.4 1.0 N A:CYS297 3.7 39.3 1.0 CD A:PRO307 3.9 42.1 1.0 CA A:CYS297 4.1 38.0 1.0 CA A:CYS306 4.1 37.4 1.0 CD2 A:HIS310 4.1 51.1 1.0 NE2 A:HIS310 4.2 51.3 1.0 CB A:LEU296 4.4 41.1 1.0 N A:PRO307 4.6 41.6 1.0 CA A:CYS294 4.6 38.5 1.0 C A:LEU296 4.7 40.1 1.0 C A:CYS306 4.7 38.9 1.0 CA A:HIS310 4.8 47.9 1.0 CA A:LEU296 5.0 39.7 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Atp Sulfurylase From Thermus Thermophillus HB8 in Complex with Aps


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Atp Sulfurylase From Thermus Thermophillus HB8 in Complex with Aps within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn602 b:35.8 occ:1.00 SG B:CYS306 2.2 30.8 1.0 SG B:CYS294 2.3 30.2 1.0 ND1 B:HIS310 2.3 33.5 1.0 SG B:CYS297 2.4 30.7 1.0 CG B:HIS310 3.1 36.5 1.0 CB B:HIS310 3.2 36.5 1.0 CB B:CYS297 3.3 29.1 1.0 CB B:CYS306 3.4 31.6 1.0 CB B:CYS294 3.4 32.1 1.0 CE1 B:HIS310 3.4 35.2 1.0 N B:CYS297 3.7 32.0 1.0 CA B:CYS306 3.9 29.6 1.0 CA B:CYS297 4.0 30.9 1.0 CD B:PRO307 4.0 27.1 1.0 CD2 B:HIS310 4.3 36.3 1.0 NE2 B:HIS310 4.5 36.3 1.0 N B:PRO307 4.6 28.4 1.0 C B:CYS306 4.6 28.7 1.0 CB B:LEU296 4.6 32.4 1.0 C B:LEU296 4.7 32.3 1.0 CA B:HIS310 4.7 36.5 1.0 CA B:CYS294 4.8 33.2 1.0 CG B:PRO307 4.8 26.9 1.0 O B:PRO307 5.0 29.1 1.0

Y.Taguchi, M.Sugishima, K.Fukuyama. Crystal Structure of A Novel Zinc-Binding Atp Sulfurylase From Thermus Thermophilus HB8 Biochemistry V. 43 4111 2004.
ISSN: ISSN 0006-2960
PubMed: 15065853
DOI: 10.1021/BI036052T