Zinc in PDB 1u7m: Solution Structure of A Diiron Protein Model: Due Ferri(II) Turn Mutant
Zinc Binding Sites:
The binding sites of Zinc atom in the Solution Structure of A Diiron Protein Model: Due Ferri(II) Turn Mutant
(pdb code 1u7m). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Solution Structure of A Diiron Protein Model: Due Ferri(II) Turn Mutant, PDB code: 1u7m:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 1u7m
Go back to
Zinc Binding Sites List in 1u7m
Zinc binding site 1 out
of 2 in the Solution Structure of A Diiron Protein Model: Due Ferri(II) Turn Mutant
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Solution Structure of A Diiron Protein Model: Due Ferri(II) Turn Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn54
b:0.0
occ:1.00
|
OE2
|
B:GLU41
|
1.8
|
0.0
|
1.0
|
OE1
|
A:GLU41
|
1.8
|
0.0
|
1.0
|
OE2
|
A:GLU11
|
1.8
|
0.0
|
1.0
|
OE1
|
A:GLU11
|
1.9
|
0.0
|
1.0
|
ND1
|
A:HIS44
|
2.1
|
0.0
|
1.0
|
CD
|
A:GLU11
|
2.3
|
0.0
|
1.0
|
CD
|
A:GLU41
|
2.9
|
0.0
|
1.0
|
CD
|
B:GLU41
|
3.0
|
0.0
|
1.0
|
CE1
|
A:HIS44
|
3.1
|
0.0
|
1.0
|
CG
|
A:HIS44
|
3.2
|
0.0
|
1.0
|
HB2
|
A:HIS44
|
3.4
|
0.0
|
1.0
|
HE1
|
A:HIS44
|
3.4
|
0.0
|
1.0
|
OE2
|
A:GLU41
|
3.5
|
0.0
|
1.0
|
HA
|
A:GLU41
|
3.6
|
0.0
|
1.0
|
HB3
|
A:HIS44
|
3.6
|
0.0
|
1.0
|
HG22
|
B:ILE37
|
3.6
|
0.0
|
1.0
|
CB
|
A:HIS44
|
3.6
|
0.0
|
1.0
|
OE1
|
B:GLU41
|
3.6
|
0.0
|
1.0
|
CG
|
A:GLU11
|
3.8
|
0.0
|
1.0
|
HG2
|
B:GLU41
|
4.1
|
0.0
|
1.0
|
CG
|
B:GLU41
|
4.1
|
0.0
|
1.0
|
HG23
|
B:ILE37
|
4.2
|
0.0
|
1.0
|
CG
|
A:GLU41
|
4.2
|
0.0
|
1.0
|
HE2
|
B:TYR18
|
4.3
|
0.0
|
1.0
|
HG3
|
A:GLU41
|
4.3
|
0.0
|
1.0
|
HG3
|
A:GLU11
|
4.3
|
0.0
|
1.0
|
NE2
|
A:HIS44
|
4.3
|
0.0
|
1.0
|
HG2
|
A:GLU11
|
4.3
|
0.0
|
1.0
|
HG3
|
B:GLU41
|
4.3
|
0.0
|
1.0
|
CD2
|
A:HIS44
|
4.3
|
0.0
|
1.0
|
CG2
|
B:ILE37
|
4.3
|
0.0
|
1.0
|
ZN
|
B:ZN154
|
4.4
|
0.0
|
1.0
|
HA
|
A:GLU11
|
4.5
|
0.0
|
1.0
|
CA
|
A:GLU41
|
4.5
|
0.0
|
1.0
|
O
|
A:GLU41
|
4.6
|
0.0
|
1.0
|
HG21
|
B:ILE37
|
4.7
|
0.0
|
1.0
|
HE1
|
B:HIS44
|
4.7
|
0.0
|
1.0
|
HH
|
B:TYR18
|
4.7
|
0.0
|
1.0
|
HB3
|
A:GLU11
|
4.7
|
0.0
|
1.0
|
CB
|
A:GLU11
|
4.7
|
0.0
|
1.0
|
HD11
|
A:ILE45
|
4.8
|
0.0
|
1.0
|
HB3
|
B:ALA14
|
4.8
|
0.0
|
1.0
|
OE1
|
B:GLU11
|
4.8
|
0.0
|
1.0
|
CB
|
A:GLU41
|
4.9
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 1u7m
Go back to
Zinc Binding Sites List in 1u7m
Zinc binding site 2 out
of 2 in the Solution Structure of A Diiron Protein Model: Due Ferri(II) Turn Mutant
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Solution Structure of A Diiron Protein Model: Due Ferri(II) Turn Mutant within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn154
b:0.0
occ:1.00
|
OE2
|
A:GLU41
|
1.8
|
0.0
|
1.0
|
OE1
|
B:GLU41
|
1.8
|
0.0
|
1.0
|
OE1
|
B:GLU11
|
1.8
|
0.0
|
1.0
|
OE2
|
B:GLU11
|
1.8
|
0.0
|
1.0
|
ND1
|
B:HIS44
|
2.1
|
0.0
|
1.0
|
CD
|
B:GLU11
|
2.3
|
0.0
|
1.0
|
CD
|
B:GLU41
|
2.9
|
0.0
|
1.0
|
CD
|
A:GLU41
|
3.0
|
0.0
|
1.0
|
CE1
|
B:HIS44
|
3.1
|
0.0
|
1.0
|
CG
|
B:HIS44
|
3.2
|
0.0
|
1.0
|
HB2
|
B:HIS44
|
3.3
|
0.0
|
1.0
|
HG22
|
A:ILE37
|
3.3
|
0.0
|
1.0
|
HA
|
B:GLU41
|
3.4
|
0.0
|
1.0
|
HE1
|
B:HIS44
|
3.4
|
0.0
|
1.0
|
OE2
|
B:GLU41
|
3.4
|
0.0
|
1.0
|
CB
|
B:HIS44
|
3.6
|
0.0
|
1.0
|
HB3
|
B:HIS44
|
3.6
|
0.0
|
1.0
|
OE1
|
A:GLU41
|
3.6
|
0.0
|
1.0
|
CG
|
B:GLU11
|
3.8
|
0.0
|
1.0
|
HG2
|
A:GLU41
|
4.0
|
0.0
|
1.0
|
CG
|
A:GLU41
|
4.1
|
0.0
|
1.0
|
HG2
|
B:GLU11
|
4.2
|
0.0
|
1.0
|
CG
|
B:GLU41
|
4.2
|
0.0
|
1.0
|
NE2
|
B:HIS44
|
4.3
|
0.0
|
1.0
|
HG3
|
B:GLU11
|
4.3
|
0.0
|
1.0
|
CG2
|
A:ILE37
|
4.3
|
0.0
|
1.0
|
CD2
|
B:HIS44
|
4.3
|
0.0
|
1.0
|
HB2
|
A:GLU41
|
4.3
|
0.0
|
1.0
|
HB3
|
B:GLU41
|
4.3
|
0.0
|
1.0
|
CA
|
B:GLU41
|
4.3
|
0.0
|
1.0
|
ZN
|
A:ZN54
|
4.4
|
0.0
|
1.0
|
HE1
|
A:HIS44
|
4.4
|
0.0
|
1.0
|
HA
|
B:GLU11
|
4.4
|
0.0
|
1.0
|
HG23
|
A:ILE37
|
4.4
|
0.0
|
1.0
|
CB
|
B:GLU41
|
4.5
|
0.0
|
1.0
|
HG21
|
A:ILE37
|
4.7
|
0.0
|
1.0
|
CB
|
B:GLU11
|
4.7
|
0.0
|
1.0
|
HB3
|
B:GLU11
|
4.7
|
0.0
|
1.0
|
HD11
|
B:ILE45
|
4.8
|
0.0
|
1.0
|
HG3
|
B:GLU41
|
4.8
|
0.0
|
1.0
|
CB
|
A:GLU41
|
4.9
|
0.0
|
1.0
|
HD12
|
A:ILE37
|
4.9
|
0.0
|
1.0
|
HH
|
A:TYR18
|
4.9
|
0.0
|
1.0
|
HG2
|
B:GLU41
|
4.9
|
0.0
|
1.0
|
HE2
|
A:TYR18
|
5.0
|
0.0
|
1.0
|
O
|
B:GLU41
|
5.0
|
0.0
|
1.0
|
HG3
|
A:GLU41
|
5.0
|
0.0
|
1.0
|
OE1
|
A:GLU11
|
5.0
|
0.0
|
1.0
|
|
Reference:
S.J.Lahr,
D.E.Engel,
S.E.Stayrook,
O.Maglio,
B.North,
S.Geremia,
A.Lombardi,
W.F.Degrado.
Analysis and Design of Turns in Alpha-Helical Hairpins J.Mol.Biol. V. 346 1441 2005.
ISSN: ISSN 0022-2836
PubMed: 15713492
DOI: 10.1016/J.JMB.2004.12.016
Page generated: Wed Oct 16 19:28:38 2024
|