Zinc in PDB 1u5s: uc(Nmr) Structure of the Complex Between Nck-2 SH3 Domain and Pinch-1 LIM4 Domain
Zinc Binding Sites:
The binding sites of Zinc atom in the uc(Nmr) Structure of the Complex Between Nck-2 SH3 Domain and Pinch-1 LIM4 Domain
(pdb code 1u5s). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
uc(Nmr) Structure of the Complex Between Nck-2 SH3 Domain and Pinch-1 LIM4 Domain, PDB code: 1u5s:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 1u5s
Go back to
Zinc Binding Sites List in 1u5s
Zinc binding site 1 out
of 2 in the uc(Nmr) Structure of the Complex Between Nck-2 SH3 Domain and Pinch-1 LIM4 Domain
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of uc(Nmr) Structure of the Complex Between Nck-2 SH3 Domain and Pinch-1 LIM4 Domain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn138
b:0.0
occ:1.00
|
ND1
|
B:HIS99
|
2.0
|
0.0
|
1.0
|
ND1
|
B:HIS102
|
2.0
|
0.0
|
1.0
|
SG
|
B:CYS79
|
2.3
|
0.0
|
1.0
|
SG
|
B:CYS82
|
2.3
|
0.0
|
1.0
|
HB3
|
B:CYS79
|
2.5
|
0.0
|
1.0
|
CB
|
B:CYS79
|
2.7
|
0.0
|
1.0
|
HB2
|
B:HIS99
|
2.7
|
0.0
|
1.0
|
HB2
|
B:CYS79
|
2.9
|
0.0
|
1.0
|
HB1
|
B:ALA81
|
2.9
|
0.0
|
1.0
|
HB2
|
B:HIS102
|
3.0
|
0.0
|
1.0
|
CE1
|
B:HIS102
|
3.0
|
0.0
|
1.0
|
CE1
|
B:HIS99
|
3.0
|
0.0
|
1.0
|
CG
|
B:HIS99
|
3.0
|
0.0
|
1.0
|
CG
|
B:HIS102
|
3.1
|
0.0
|
1.0
|
H
|
B:CYS82
|
3.1
|
0.0
|
1.0
|
HE1
|
B:HIS102
|
3.2
|
0.0
|
1.0
|
HE1
|
B:HIS99
|
3.2
|
0.0
|
1.0
|
H
|
B:HIS99
|
3.3
|
0.0
|
1.0
|
CB
|
B:HIS99
|
3.4
|
0.0
|
1.0
|
CB
|
B:HIS102
|
3.4
|
0.0
|
1.0
|
HB3
|
B:HIS102
|
3.8
|
0.0
|
1.0
|
N
|
B:CYS82
|
3.8
|
0.0
|
1.0
|
CB
|
B:ALA81
|
3.9
|
0.0
|
1.0
|
CB
|
B:CYS82
|
3.9
|
0.0
|
1.0
|
HB2
|
B:ALA81
|
4.0
|
0.0
|
1.0
|
H
|
B:ALA81
|
4.1
|
0.0
|
1.0
|
HB3
|
B:CYS82
|
4.1
|
0.0
|
1.0
|
N
|
B:HIS99
|
4.1
|
0.0
|
1.0
|
HB3
|
B:HIS99
|
4.1
|
0.0
|
1.0
|
CD2
|
B:HIS99
|
4.1
|
0.0
|
1.0
|
NE2
|
B:HIS99
|
4.2
|
0.0
|
1.0
|
NE2
|
B:HIS102
|
4.2
|
0.0
|
1.0
|
CD2
|
B:HIS102
|
4.2
|
0.0
|
1.0
|
CA
|
B:CYS79
|
4.2
|
0.0
|
1.0
|
HB2
|
B:ARG84
|
4.2
|
0.0
|
1.0
|
CA
|
B:HIS99
|
4.4
|
0.0
|
1.0
|
CA
|
B:CYS82
|
4.5
|
0.0
|
1.0
|
H
|
B:ARG84
|
4.6
|
0.0
|
1.0
|
O
|
B:CYS79
|
4.6
|
0.0
|
1.0
|
HB3
|
B:ALA81
|
4.6
|
0.0
|
1.0
|
C
|
B:CYS79
|
4.6
|
0.0
|
1.0
|
C
|
B:ALA81
|
4.6
|
0.0
|
1.0
|
HB2
|
B:CYS82
|
4.6
|
0.0
|
1.0
|
CA
|
B:ALA81
|
4.7
|
0.0
|
1.0
|
H
|
B:HIS102
|
4.7
|
0.0
|
1.0
|
N
|
B:ALA81
|
4.7
|
0.0
|
1.0
|
HA
|
B:CYS79
|
4.7
|
0.0
|
1.0
|
HG12
|
B:ILE86
|
4.7
|
0.0
|
1.0
|
H
|
B:CYS79
|
4.8
|
0.0
|
1.0
|
CA
|
B:HIS102
|
4.9
|
0.0
|
1.0
|
HD3
|
B:ARG84
|
4.9
|
0.0
|
1.0
|
H
|
B:ARG83
|
4.9
|
0.0
|
1.0
|
HA
|
B:TRP98
|
5.0
|
0.0
|
1.0
|
HA
|
B:HIS99
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 1u5s
Go back to
Zinc Binding Sites List in 1u5s
Zinc binding site 2 out
of 2 in the uc(Nmr) Structure of the Complex Between Nck-2 SH3 Domain and Pinch-1 LIM4 Domain
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of uc(Nmr) Structure of the Complex Between Nck-2 SH3 Domain and Pinch-1 LIM4 Domain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn139
b:0.0
occ:1.00
|
ND1
|
B:HIS129
|
2.0
|
0.0
|
1.0
|
SG
|
B:CYS108
|
2.3
|
0.0
|
1.0
|
SG
|
B:CYS105
|
2.3
|
0.0
|
1.0
|
SG
|
B:CYS126
|
2.3
|
0.0
|
1.0
|
H
|
B:CYS126
|
2.5
|
0.0
|
1.0
|
HB2
|
B:CYS126
|
2.6
|
0.0
|
1.0
|
HB3
|
B:CYS105
|
2.6
|
0.0
|
1.0
|
HB2
|
B:CYS105
|
2.6
|
0.0
|
1.0
|
CB
|
B:CYS105
|
2.7
|
0.0
|
1.0
|
CB
|
B:CYS126
|
2.9
|
0.0
|
1.0
|
HB2
|
B:HIS129
|
2.9
|
0.0
|
1.0
|
CE1
|
B:HIS129
|
3.0
|
0.0
|
1.0
|
CG
|
B:HIS129
|
3.1
|
0.0
|
1.0
|
HE1
|
B:HIS129
|
3.2
|
0.0
|
1.0
|
H
|
B:CYS108
|
3.3
|
0.0
|
1.0
|
N
|
B:CYS126
|
3.3
|
0.0
|
1.0
|
HB3
|
B:LYS107
|
3.4
|
0.0
|
1.0
|
HB3
|
B:CYS108
|
3.4
|
0.0
|
1.0
|
CB
|
B:HIS129
|
3.5
|
0.0
|
1.0
|
CB
|
B:CYS108
|
3.5
|
0.0
|
1.0
|
CA
|
B:CYS126
|
3.7
|
0.0
|
1.0
|
N
|
B:CYS108
|
3.8
|
0.0
|
1.0
|
HB3
|
B:CYS126
|
3.8
|
0.0
|
1.0
|
HB3
|
B:HIS129
|
3.9
|
0.0
|
1.0
|
H
|
B:LYS107
|
4.1
|
0.0
|
1.0
|
H
|
B:LYS110
|
4.1
|
0.0
|
1.0
|
HA
|
B:TYR125
|
4.1
|
0.0
|
1.0
|
NE2
|
B:HIS129
|
4.2
|
0.0
|
1.0
|
HB2
|
B:LYS110
|
4.2
|
0.0
|
1.0
|
HB3
|
B:LYS110
|
4.2
|
0.0
|
1.0
|
H
|
B:HIS129
|
4.2
|
0.0
|
1.0
|
CA
|
B:CYS105
|
4.2
|
0.0
|
1.0
|
CD2
|
B:HIS129
|
4.2
|
0.0
|
1.0
|
H
|
B:GLU109
|
4.2
|
0.0
|
1.0
|
HA
|
B:CYS126
|
4.3
|
0.0
|
1.0
|
CA
|
B:CYS108
|
4.3
|
0.0
|
1.0
|
HB2
|
B:CYS108
|
4.3
|
0.0
|
1.0
|
C
|
B:TYR125
|
4.4
|
0.0
|
1.0
|
CB
|
B:LYS107
|
4.4
|
0.0
|
1.0
|
HA
|
B:CYS105
|
4.6
|
0.0
|
1.0
|
HD1
|
B:TYR125
|
4.6
|
0.0
|
1.0
|
C
|
B:LYS107
|
4.7
|
0.0
|
1.0
|
CB
|
B:LYS110
|
4.7
|
0.0
|
1.0
|
H
|
B:CYS105
|
4.7
|
0.0
|
1.0
|
N
|
B:LYS107
|
4.8
|
0.0
|
1.0
|
N
|
B:GLU109
|
4.8
|
0.0
|
1.0
|
C
|
B:CYS105
|
4.8
|
0.0
|
1.0
|
CA
|
B:HIS129
|
4.8
|
0.0
|
1.0
|
CA
|
B:TYR125
|
4.8
|
0.0
|
1.0
|
N
|
B:HIS129
|
4.8
|
0.0
|
1.0
|
C
|
B:CYS126
|
4.9
|
0.0
|
1.0
|
C
|
B:CYS108
|
4.9
|
0.0
|
1.0
|
CA
|
B:LYS107
|
4.9
|
0.0
|
1.0
|
N
|
B:LYS110
|
4.9
|
0.0
|
1.0
|
HB2
|
B:LYS107
|
5.0
|
0.0
|
1.0
|
N
|
B:CYS105
|
5.0
|
0.0
|
1.0
|
|
Reference:
J.Vaynberg,
T.Fukuda,
K.Chen,
O.Vinogradova,
A.Velyvis,
Y.Tu,
L.Ng,
C.Wu,
J.Qin.
Structure of An Ultraweak Protein-Protein Complex and Its Crucial Role in Regulation of Cell Morphology and Motility. Mol.Cell V. 17 513 2005.
ISSN: ISSN 1097-2765
PubMed: 15721255
DOI: 10.1016/J.MOLCEL.2004.12.031
Page generated: Wed Oct 16 19:27:42 2024
|