Atomistry » Zinc » PDB 1rqf-1sda » 1sda
Atomistry »
  Zinc »
    PDB 1rqf-1sda »
      1sda »

Zinc in PDB 1sda: Crystal Structure of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase

Enzymatic activity of Crystal Structure of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase

All present enzymatic activity of Crystal Structure of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase:
1.15.1.1;

Protein crystallography data

The structure of Crystal Structure of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase, PDB code: 1sda was solved by C.D.Smith, M.Carson, M.Van Der Woerd, J.Chen, H.Ischiropoulos, J.S.Beckman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 93.650, 90.330, 71.650, 90.00, 95.10, 90.00
R / Rfree (%) 18.7 / n/a

Other elements in 1sda:

The structure of Crystal Structure of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase also contains other interesting chemical elements:

Copper (Cu) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase (pdb code 1sda). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase, PDB code: 1sda:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 1sda

Go back to Zinc Binding Sites List in 1sda
Zinc binding site 1 out of 4 in the Crystal Structure of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Zn802

b:13.8
occ:1.00
ND1 O:HIS78 1.8 4.8 1.0
ND1 O:HIS61 1.8 3.1 1.0
OD1 O:ASP81 2.0 12.5 1.0
ND1 O:HIS69 2.2 13.5 1.0
CE1 O:HIS78 2.5 4.5 1.0
CE1 O:HIS61 2.7 3.8 1.0
CG O:ASP81 2.8 11.9 1.0
CG O:HIS61 2.9 2.7 1.0
OD2 O:ASP81 3.0 15.6 1.0
CE1 O:HIS69 3.0 11.2 1.0
CG O:HIS78 3.0 4.8 1.0
CG O:HIS69 3.4 10.6 1.0
CB O:HIS61 3.5 3.4 1.0
O O:LYS134 3.7 10.7 1.0
CB O:HIS78 3.7 7.0 1.0
NE2 O:HIS78 3.7 5.1 1.0
NE2 O:HIS61 3.8 2.0 1.0
CB O:HIS69 3.8 10.7 1.0
CD2 O:HIS61 4.0 2.0 1.0
CD2 O:HIS78 4.0 2.0 1.0
CA O:HIS69 4.1 11.6 1.0
NE2 O:HIS69 4.2 10.4 1.0
CB O:ASP81 4.3 11.2 1.0
CD2 O:HIS69 4.4 11.2 1.0
N O:GLY70 4.7 11.4 1.0
CA O:ASP81 4.8 9.6 1.0
N O:HIS78 4.8 10.4 1.0
C O:LYS134 4.8 9.4 1.0
CA O:HIS78 4.9 7.6 1.0
CD2 O:HIS44 5.0 5.5 1.0
CA O:HIS61 5.0 4.9 1.0
C O:HIS69 5.0 11.1 1.0

Zinc binding site 2 out of 4 in 1sda

Go back to Zinc Binding Sites List in 1sda
Zinc binding site 2 out of 4 in the Crystal Structure of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn805

b:16.6
occ:1.00
ND1 Y:HIS61 1.8 8.8 1.0
ND1 Y:HIS69 1.9 10.4 1.0
ND1 Y:HIS78 1.9 7.7 1.0
OD1 Y:ASP81 2.0 6.4 1.0
CE1 Y:HIS78 2.6 8.7 1.0
CE1 Y:HIS69 2.7 11.8 1.0
CE1 Y:HIS61 2.7 6.4 1.0
CG Y:ASP81 2.8 5.9 1.0
OD2 Y:ASP81 2.9 2.8 1.0
CG Y:HIS61 2.9 4.9 1.0
CG Y:HIS69 3.0 10.4 1.0
CG Y:HIS78 3.1 10.2 1.0
CB Y:HIS61 3.5 4.2 1.0
CB Y:HIS69 3.6 9.6 1.0
O Y:LYS134 3.6 8.4 1.0
CB Y:HIS78 3.7 9.5 1.0
NE2 Y:HIS78 3.8 7.9 1.0
NE2 Y:HIS61 3.8 6.6 1.0
NE2 Y:HIS69 3.9 12.0 1.0
CD2 Y:HIS61 4.0 4.2 1.0
CA Y:HIS69 4.0 9.4 1.0
CD2 Y:HIS78 4.1 9.4 1.0
CD2 Y:HIS69 4.1 10.3 1.0
CB Y:ASP81 4.2 5.8 1.0
C Y:LYS134 4.6 11.2 1.0
N Y:HIS78 4.8 10.9 1.0
CA Y:ASP81 4.8 8.8 1.0
N Y:GLY70 4.8 8.4 1.0
CA Y:HIS78 4.9 11.1 1.0
N Y:ASP81 4.9 9.3 1.0
C Y:HIS69 5.0 9.4 1.0
CA Y:HIS61 5.0 5.1 1.0

Zinc binding site 3 out of 4 in 1sda

Go back to Zinc Binding Sites List in 1sda
Zinc binding site 3 out of 4 in the Crystal Structure of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn808

b:12.7
occ:1.00
ND1 B:HIS61 1.8 9.1 1.0
ND1 B:HIS78 1.8 5.0 1.0
OD1 B:ASP81 1.9 3.5 1.0
ND1 B:HIS69 2.1 10.7 1.0
CE1 B:HIS61 2.6 9.9 1.0
CE1 B:HIS78 2.7 5.8 1.0
CG B:ASP81 2.7 8.0 1.0
OD2 B:ASP81 2.8 9.8 1.0
CG B:HIS61 2.9 8.1 1.0
CG B:HIS78 2.9 5.8 1.0
CE1 B:HIS69 3.0 10.2 1.0
CG B:HIS69 3.2 10.4 1.0
CB B:HIS61 3.4 9.1 1.0
CB B:HIS78 3.5 4.8 1.0
CB B:HIS69 3.6 9.7 1.0
O B:LYS134 3.8 11.5 1.0
NE2 B:HIS61 3.8 9.8 1.0
NE2 B:HIS78 3.9 6.0 1.0
CD2 B:HIS61 3.9 8.6 1.0
CD2 B:HIS78 4.0 4.1 1.0
CA B:HIS69 4.2 8.5 1.0
CB B:ASP81 4.2 7.5 1.0
NE2 B:HIS69 4.2 10.9 1.0
CD2 B:HIS69 4.3 10.0 1.0
CA B:HIS78 4.7 3.0 1.0
N B:HIS78 4.7 2.5 1.0
CA B:ASP81 4.8 8.5 1.0
C B:LYS134 4.9 9.3 1.0
N B:GLY70 4.9 8.4 1.0
CA B:HIS61 5.0 9.0 1.0
N B:ASP81 5.0 6.8 1.0

Zinc binding site 4 out of 4 in 1sda

Go back to Zinc Binding Sites List in 1sda
Zinc binding site 4 out of 4 in the Crystal Structure of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn811

b:16.3
occ:1.00
ND1 G:HIS61 1.8 14.4 1.0
ND1 G:HIS78 2.0 11.0 1.0
ND1 G:HIS69 2.0 4.7 1.0
OD1 G:ASP81 2.1 11.3 1.0
CE1 G:HIS78 2.7 10.8 1.0
CE1 G:HIS61 2.7 14.5 1.0
CE1 G:HIS69 2.8 4.2 1.0
CG G:HIS61 2.9 11.8 1.0
CG G:ASP81 2.9 9.7 1.0
OD2 G:ASP81 3.0 8.6 1.0
CG G:HIS69 3.2 4.5 1.0
CG G:HIS78 3.2 10.2 1.0
CB G:HIS61 3.4 10.1 1.0
CB G:HIS69 3.6 4.5 1.0
O G:LYS134 3.7 16.6 1.0
CB G:HIS78 3.8 9.9 1.0
NE2 G:HIS61 3.8 14.2 1.0
CD2 G:HIS61 3.9 13.3 1.0
NE2 G:HIS78 3.9 11.8 1.0
NE2 G:HIS69 4.0 2.0 1.0
CA G:HIS69 4.1 9.7 1.0
CD2 G:HIS78 4.2 7.0 1.0
CD2 G:HIS69 4.2 3.0 1.0
CB G:ASP81 4.3 7.9 1.0
C G:LYS134 4.8 15.3 1.0
CA G:HIS61 4.9 8.7 1.0
CA G:THR135 4.9 12.0 1.0
CA G:ASP81 4.9 7.1 1.0
CD2 G:HIS44 4.9 8.7 1.0
N G:HIS78 4.9 11.4 1.0
CA G:HIS78 5.0 10.4 1.0
N G:GLY70 5.0 12.3 1.0

Reference:

C.D.Smith, M.Carson, M.Van Der Woerd, J.Chen, H.Ischiropoulos, J.S.Beckman. Crystal Structure of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase. Arch.Biochem.Biophys. V. 299 350 1992.
ISSN: ISSN 0003-9861
PubMed: 1444476
DOI: 10.1016/0003-9861(92)90286-6
Page generated: Wed Oct 16 18:47:25 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy