Zinc in PDB 1ryq: Putative Dna-Directed Rna Polymerase, Subunit E'' From Pyrococcus Furiosus Pfu-263306-001

The structure of Putative Dna-Directed Rna Polymerase, Subunit E'' From Pyrococcus Furiosus Pfu-263306-001, PDB code: 1ryq was solved by Z.-J.Liu, L.Chen, W.Tempel, A.Shah, W.B.Arendall Iii, J.P.Rose, P.S.Brereton, M.Izumi, F.E.Jenney Jr., H.S.Lee, F.L.Poole Ii, C.Shah, F.J.Sugar, M.W.W.Adams, D.C.Richardson, J.S.Richardson, B.-C.Wang, Southeast Collaboratory For Structural Genomics (Secsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.53 / 1.38
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	45.534, 45.534, 50.760, 90.00, 90.00, 120.00
R / Rfree (%)	19.3 / 20.4

The binding sites of Zinc atom in the Putative Dna-Directed Rna Polymerase, Subunit E'' From Pyrococcus Furiosus Pfu-263306-001 (pdb code 1ryq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Putative Dna-Directed Rna Polymerase, Subunit E'' From Pyrococcus Furiosus Pfu-263306-001, PDB code: 1ryq:

Zinc binding site 1 out of 1 in the Putative Dna-Directed Rna Polymerase, Subunit E'' From Pyrococcus Furiosus Pfu-263306-001


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Putative Dna-Directed Rna Polymerase, Subunit E'' From Pyrococcus Furiosus Pfu-263306-001 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:12.0 occ:1.00 SG A:CYS21 2.3 11.5 1.0 SG A:CYS9 2.3 13.1 1.0 SG A:CYS6 2.4 11.4 1.0 SG A:CYS18 2.4 12.4 1.0 CB A:CYS6 3.2 10.1 1.0 CB A:CYS18 3.2 13.6 1.0 CB A:CYS21 3.4 11.5 1.0 CB A:CYS9 3.4 13.6 1.0 N A:CYS21 3.7 12.5 1.0 N A:CYS9 3.8 11.6 1.0 CA A:CYS9 4.1 13.2 1.0 CA A:CYS21 4.1 10.9 1.0 CB A:VAL20 4.5 13.2 1.0 CA A:CYS6 4.6 11.7 1.0 CA A:CYS18 4.7 13.6 1.0 C A:CYS9 4.7 10.8 1.0 CB A:SER23 4.7 12.8 1.0 C A:HIS8 4.8 14.5 1.0 C A:CYS21 4.8 12.0 1.0 N A:HIS10 4.8 10.5 1.0 C A:VAL20 4.8 12.8 1.0 O A:HOH129 4.8 22.3 1.0 CB A:HIS8 4.8 13.9 1.0 N A:GLY22 4.8 12.2 1.0 N A:SER23 4.8 11.5 1.0 CB A:TYR11 4.9 14.1 1.0

Z.J.Liu, D.Lin, W.Tempel, J.L.Praissman, J.P.Rose, B.C.Wang. Parameter-Space Screening: A Powerful Tool For High-Throughput Crystal Structure Determination. Acta Crystallogr.,Sect.D V. 61 520 2005.
ISSN: ISSN 0907-4449
PubMed: 15858261
DOI: 10.1107/S0907444905003239