Zinc in PDB 1rxr: High Resolution Solution Structure of the Retinoid X Receptor Dna Binding Domain, uc(Nmr), 20 Structure

The binding sites of Zinc atom in the High Resolution Solution Structure of the Retinoid X Receptor Dna Binding Domain, uc(Nmr), 20 Structure (pdb code 1rxr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the High Resolution Solution Structure of the Retinoid X Receptor Dna Binding Domain, uc(Nmr), 20 Structure, PDB code: 1rxr:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the High Resolution Solution Structure of the Retinoid X Receptor Dna Binding Domain, uc(Nmr), 20 Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of High Resolution Solution Structure of the Retinoid X Receptor Dna Binding Domain, uc(Nmr), 20 Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn213 b:0.0 occ:1.00 SG A:CYS135 2.3 0.0 1.0 SG A:CYS155 2.3 0.0 1.0 SG A:CYS152 2.3 0.0 1.0 SG A:CYS138 2.3 0.0 1.0 HB2 A:CYS155 3.2 0.0 1.0 H A:CYS152 3.2 0.0 1.0 H A:CYS138 3.2 0.0 1.0 CB A:CYS135 3.3 0.0 1.0 CB A:CYS155 3.4 0.0 1.0 HB3 A:CYS135 3.4 0.0 1.0 HB2 A:CYS135 3.5 0.0 1.0 HB A:ILE137 3.5 0.0 1.0 HB2 A:ASP140 3.5 0.0 1.0 H A:CYS155 3.7 0.0 1.0 CB A:CYS152 3.8 0.0 1.0 HH12 A:ARG191 3.8 0.0 1.0 HB3 A:CYS152 3.9 0.0 1.0 CB A:CYS138 3.9 0.0 1.0 NH1 A:ARG191 3.9 0.0 1.0 N A:CYS152 4.0 0.0 1.0 HB3 A:CYS155 4.0 0.0 1.0 N A:CYS138 4.2 0.0 1.0 OD2 A:ASP140 4.2 0.0 1.0 HH11 A:ARG191 4.2 0.0 1.0 HB3 A:CYS138 4.2 0.0 1.0 H A:ASP140 4.2 0.0 1.0 HD11 A:ILE137 4.3 0.0 1.0 HD3 A:ARG191 4.4 0.0 1.0 N A:CYS155 4.4 0.0 1.0 CA A:CYS152 4.4 0.0 1.0 CG A:ASP140 4.4 0.0 1.0 CB A:ASP140 4.4 0.0 1.0 HA A:SER151 4.4 0.0 1.0 CZ A:ARG191 4.4 0.0 1.0 CA A:CYS155 4.5 0.0 1.0 CB A:ILE137 4.6 0.0 1.0 HB2 A:CYS152 4.6 0.0 1.0 CA A:CYS138 4.6 0.0 1.0 HG23 A:ILE137 4.6 0.0 1.0 H A:ILE137 4.7 0.0 1.0 HB2 A:CYS138 4.7 0.0 1.0 CA A:CYS135 4.8 0.0 1.0 HH22 A:ARG191 4.8 0.0 1.0 O A:CYS152 4.8 0.0 1.0 NH2 A:ARG191 4.8 0.0 1.0 HA A:CYS155 4.9 0.0 1.0 OG A:SER151 4.9 0.0 1.0 C A:CYS152 4.9 0.0 1.0 H A:GLY139 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the High Resolution Solution Structure of the Retinoid X Receptor Dna Binding Domain, uc(Nmr), 20 Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of High Resolution Solution Structure of the Retinoid X Receptor Dna Binding Domain, uc(Nmr), 20 Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn214 b:0.0 occ:1.00 SG A:CYS187 2.3 0.0 1.0 SG A:CYS190 2.3 0.0 1.0 SG A:CYS171 2.3 0.0 1.0 SG A:CYS177 2.3 0.0 1.0 HB2 A:CYS190 3.0 0.0 1.0 HB2 A:CYS177 3.0 0.0 1.0 CB A:CYS177 3.0 0.0 1.0 HB3 A:CYS177 3.1 0.0 1.0 CB A:CYS190 3.2 0.0 1.0 CB A:CYS171 3.3 0.0 1.0 HB2 A:CYS171 3.3 0.0 1.0 HB3 A:CYS171 3.4 0.0 1.0 HB2 A:ASP173 3.5 0.0 1.0 HB3 A:CYS190 3.6 0.0 1.0 H A:CYS190 3.9 0.0 1.0 OD2 A:ASP173 4.0 0.0 1.0 CB A:CYS187 4.0 0.0 1.0 HD12 A:ILE179 4.2 0.0 1.0 HA A:CYS187 4.4 0.0 1.0 CB A:ASP173 4.4 0.0 1.0 HB2 A:CYS187 4.4 0.0 1.0 CA A:CYS190 4.5 0.0 1.0 CA A:CYS177 4.5 0.0 1.0 HG12 A:ILE179 4.6 0.0 1.0 N A:CYS190 4.6 0.0 1.0 CG A:ASP173 4.6 0.0 1.0 HB3 A:CYS187 4.7 0.0 1.0 CA A:CYS187 4.7 0.0 1.0 HB3 A:ASP173 4.7 0.0 1.0 HB3 A:TYR189 4.7 0.0 1.0 CA A:CYS171 4.7 0.0 1.0 HD2 A:TYR189 4.8 0.0 1.0 HA A:CYS177 4.9 0.0 1.0 O A:CYS187 4.9 0.0 1.0 HG3 A:GLN183 5.0 0.0 1.0 HA A:CYS190 5.0 0.0 1.0

S.M.Holmbeck, M.P.Foster, D.R.Casimiro, D.S.Sem, H.J.Dyson, P.E.Wright. High-Resolution Solution Structure of the Retinoid X Receptor Dna-Binding Domain. J.Mol.Biol. V. 281 271 1998.
ISSN: ISSN 0022-2836
PubMed: 9698548
DOI: 10.1006/JMBI.1998.1908