Zinc in PDB 1rp0: Crystal Structure of THI1 Protein From Arabidopsis Thaliana

The structure of Crystal Structure of THI1 Protein From Arabidopsis Thaliana, PDB code: 1rp0 was solved by P.H.C.Godoi, M.A.Van Sluys, C.F.M.Menck, G.Oliva, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	70.71 / 1.60
Space group	F 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	102.356, 133.147, 142.301, 90.00, 90.00, 90.00
R / Rfree (%)	13.9 / 17.1

The binding sites of Zinc atom in the Crystal Structure of THI1 Protein From Arabidopsis Thaliana (pdb code 1rp0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of THI1 Protein From Arabidopsis Thaliana, PDB code: 1rp0:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of THI1 Protein From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of THI1 Protein From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn500 b:16.5 occ:0.60 O A:HOH810 2.0 24.2 1.0 OD1 A:ASP190 2.0 30.1 1.0 O1R A:AHZ600 2.1 32.1 1.0 NE2 A:HIS189 2.1 21.9 1.0 N3T A:AHZ600 2.1 20.1 1.0 O A:HOH809 2.2 39.1 1.0 CE1 A:HIS189 2.8 32.6 1.0 C2T A:AHZ600 2.9 19.7 1.0 C1R A:AHZ600 2.9 22.5 1.0 CG A:ASP190 3.0 41.7 1.0 C4T A:AHZ600 3.1 20.9 1.0 CD2 A:HIS189 3.2 19.0 1.0 OD2 A:ASP190 3.3 39.9 1.0 C1M A:AHZ600 3.5 24.9 1.0 ND1 A:HIS189 4.0 29.4 1.0 NH2 A:ARG251 4.1 17.0 1.0 O2R A:AHZ600 4.1 20.0 1.0 CG A:HIS189 4.2 18.7 1.0 C5T A:AHZ600 4.3 17.6 1.0 CB A:ASP190 4.4 31.1 1.0 S1T A:AHZ600 4.4 22.4 1.0 O A:HOH802 4.4 19.7 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of THI1 Protein From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of THI1 Protein From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn501 b:17.3 occ:0.60 O B:HOH828 2.0 43.8 1.0 O1R B:AHZ601 2.0 34.0 1.0 NE2 B:HIS189 2.0 25.6 1.0 OD1 B:ASP190 2.1 35.2 1.0 N3T B:AHZ601 2.1 19.6 1.0 O B:HOH829 2.1 33.6 1.0 CE1 B:HIS189 2.8 35.7 1.0 C1R B:AHZ601 2.8 31.7 1.0 C2T B:AHZ601 2.8 20.3 1.0 CG B:ASP190 3.1 45.4 1.0 C4T B:AHZ601 3.2 20.3 1.0 CD2 B:HIS189 3.2 23.9 1.0 OD2 B:ASP190 3.5 36.9 1.0 C1M B:AHZ601 3.6 23.3 1.0 ND1 B:HIS189 3.9 27.5 1.0 O2R B:AHZ601 4.0 20.4 1.0 NH2 B:ARG251 4.0 19.2 1.0 CG B:HIS189 4.2 22.8 1.0 C5T B:AHZ601 4.3 16.1 1.0 O B:HOH824 4.4 23.2 1.0 S1T B:AHZ601 4.4 23.0 1.0 CB B:ASP190 4.4 34.4 1.0

P.H.Godoi, R.S.Galhardo, D.D.Luche, M.A.Van Sluys, C.F.Menck, G.Oliva. Structure of the Thiazole Biosynthetic Enzyme THI1 From Arabidopsis Thaliana. J.Biol.Chem. V. 281 30957 2006.
ISSN: ISSN 0021-9258
PubMed: 16912043
DOI: 10.1074/JBC.M604469200