Atomistry » Zinc » PDB 1rae-1rpj » 1ro6
Atomistry »
  Zinc »
    PDB 1rae-1rpj »
      1ro6 »

Zinc in PDB 1ro6: Crystal Structure of PDE4B2B Complexed with Rolipram (R & S)

Enzymatic activity of Crystal Structure of PDE4B2B Complexed with Rolipram (R & S)

All present enzymatic activity of Crystal Structure of PDE4B2B Complexed with Rolipram (R & S):
3.1.4.17;

Protein crystallography data

The structure of Crystal Structure of PDE4B2B Complexed with Rolipram (R & S), PDB code: 1ro6 was solved by R.X.Xu, W.J.Rocque, M.H.Lambert, D.E.Vanderwall, R.T.Nolte, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 103.148, 160.891, 108.780, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 24.5

Other elements in 1ro6:

The structure of Crystal Structure of PDE4B2B Complexed with Rolipram (R & S) also contains other interesting chemical elements:

Arsenic (As) 1 atom
Manganese (Mn) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of PDE4B2B Complexed with Rolipram (R & S) (pdb code 1ro6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of PDE4B2B Complexed with Rolipram (R & S), PDB code: 1ro6:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1ro6

Go back to Zinc Binding Sites List in 1ro6
Zinc binding site 1 out of 2 in the Crystal Structure of PDE4B2B Complexed with Rolipram (R & S)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of PDE4B2B Complexed with Rolipram (R & S) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn529

b:24.9
occ:1.00
O A:HOH788 1.9 32.9 1.0
NE2 A:HIS274 2.0 19.5 1.0
NE2 A:HIS238 2.0 20.4 1.0
OD2 A:ASP275 2.2 22.5 1.0
OD1 A:ASP392 2.2 25.5 1.0
CD2 A:HIS274 3.0 19.6 1.0
CE1 A:HIS238 3.0 20.1 1.0
CD2 A:HIS238 3.0 19.5 1.0
CE1 A:HIS274 3.0 19.6 1.0
CG A:ASP392 3.1 26.7 1.0
O1 A:ROL601 3.3 34.4 0.5
CG A:ASP275 3.3 21.2 1.0
OD2 A:ASP392 3.4 27.2 1.0
OD1 A:ASP275 3.9 21.7 1.0
MN A:MN530 4.0 79.3 1.0
O A:HOH778 4.1 44.2 1.0
CG A:HIS274 4.1 18.9 1.0
ND1 A:HIS274 4.1 18.8 1.0
ND1 A:HIS238 4.1 20.4 1.0
CG A:HIS238 4.2 20.2 1.0
CD2 A:HIS234 4.2 19.5 1.0
C1 A:ROL601 4.4 35.3 0.5
CB A:ASP275 4.4 20.4 1.0
CB A:ASP392 4.5 25.5 1.0
CG2 A:VAL242 4.5 23.5 1.0
NE2 A:HIS234 4.6 21.1 1.0
H1 A:ROL601 4.7 35.8 0.5
N1 A:ROL601 5.0 35.8 0.5

Zinc binding site 2 out of 2 in 1ro6

Go back to Zinc Binding Sites List in 1ro6
Zinc binding site 2 out of 2 in the Crystal Structure of PDE4B2B Complexed with Rolipram (R & S)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of PDE4B2B Complexed with Rolipram (R & S) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn529

b:29.7
occ:1.00
O B:HOH715 1.8 31.2 1.0
NE2 B:HIS238 1.9 25.4 1.0
NE2 B:HIS274 2.1 25.9 1.0
OD2 B:ASP275 2.1 30.2 1.0
OD1 B:ASP392 2.1 30.4 1.0
CE1 B:HIS238 2.9 25.4 1.0
CD2 B:HIS238 2.9 25.6 1.0
CD2 B:HIS274 3.0 25.8 1.0
O1 B:ROL602 3.0 41.6 0.5
CE1 B:HIS274 3.1 26.7 1.0
CG B:ASP392 3.2 31.2 1.0
CG B:ASP275 3.2 28.1 1.0
OD2 B:ASP392 3.6 32.2 1.0
OD1 B:ASP275 3.7 28.6 1.0
O B:HOH695 4.0 33.2 1.0
ND1 B:HIS238 4.0 24.8 1.0
CG B:HIS238 4.1 26.5 1.0
C1 B:ROL602 4.1 42.2 0.5
O B:HOH716 4.1 74.8 1.0
ND1 B:HIS274 4.2 25.4 1.0
CG B:HIS274 4.2 26.1 1.0
CD2 B:HIS234 4.2 28.6 1.0
CB B:ASP275 4.4 27.0 1.0
CB B:ASP392 4.5 29.6 1.0
H1 B:ROL602 4.5 42.4 0.5
CG2 B:VAL242 4.5 28.8 1.0
NE2 B:HIS234 4.6 28.3 1.0
N1 B:ROL602 4.7 42.4 0.5
MN B:MN530 4.8 79.1 1.0
CA B:ASP392 5.0 29.8 1.0

Reference:

R.X.Xu, W.J.Rocque, M.H.Lambert, D.E.Vanderwall, M.A.Luther, R.T.Nolte. Crystal Structures of the Catalytic Domain of Phosphodiesterase 4B Complexed with Amp, 8-Br-Amp, and Rolipram. J.Mol.Biol. V. 337 355 2004.
ISSN: ISSN 0022-2836
PubMed: 15003452
DOI: 10.1016/J.JMB.2004.01.040
Page generated: Wed Dec 16 03:03:02 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy