Atomistry » Zinc » PDB 1rae-1rpj » 1ro2
Atomistry »
  Zinc »
    PDB 1rae-1rpj »
      1ro2 »

Zinc in PDB 1ro2: Bifunctional Dna Primase/Polymerase Domain of ORF904 From the Archaeal Plasmid PRN1- Triple Mutant F50M/L107M/L110M Manganese Soak

Protein crystallography data

The structure of Bifunctional Dna Primase/Polymerase Domain of ORF904 From the Archaeal Plasmid PRN1- Triple Mutant F50M/L107M/L110M Manganese Soak, PDB code: 1ro2 was solved by G.Lipps, A.O.Weinzierl, G.Von Scheven, C.Buchen, P.Cramer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.60
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 45.811, 119.907, 41.830, 90.00, 90.00, 90.00
R / Rfree (%) 25.2 / 26.5

Other elements in 1ro2:

The structure of Bifunctional Dna Primase/Polymerase Domain of ORF904 From the Archaeal Plasmid PRN1- Triple Mutant F50M/L107M/L110M Manganese Soak also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Bifunctional Dna Primase/Polymerase Domain of ORF904 From the Archaeal Plasmid PRN1- Triple Mutant F50M/L107M/L110M Manganese Soak (pdb code 1ro2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Bifunctional Dna Primase/Polymerase Domain of ORF904 From the Archaeal Plasmid PRN1- Triple Mutant F50M/L107M/L110M Manganese Soak, PDB code: 1ro2:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1ro2

Go back to Zinc Binding Sites List in 1ro2
Zinc binding site 1 out of 2 in the Bifunctional Dna Primase/Polymerase Domain of ORF904 From the Archaeal Plasmid PRN1- Triple Mutant F50M/L107M/L110M Manganese Soak


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Bifunctional Dna Primase/Polymerase Domain of ORF904 From the Archaeal Plasmid PRN1- Triple Mutant F50M/L107M/L110M Manganese Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:44.6
occ:1.00
ND1 A:HIS188 2.2 18.9 1.0
O A:HOH516 2.3 40.4 1.0
O A:HOH515 2.4 39.2 1.0
NE2 A:HIS141 2.4 28.4 1.0
CE1 A:HIS188 3.1 16.4 1.0
CD2 A:HIS141 3.2 27.7 1.0
CG A:HIS188 3.2 16.8 1.0
CE1 A:HIS141 3.6 29.4 1.0
CB A:HIS188 3.6 16.6 1.0
CB A:CYS191 3.8 30.4 1.0
SG A:CYS191 4.0 37.2 1.0
NE2 A:HIS188 4.2 16.4 1.0
CA A:HIS188 4.2 17.8 1.0
CD2 A:HIS188 4.3 16.6 1.0
CG A:HIS141 4.4 25.6 1.0
ND1 A:HIS141 4.6 30.6 1.0
CD1 A:TRP198 4.6 20.6 1.0
CG1 A:VAL186 4.8 24.4 1.0
CB A:TRP198 4.9 18.0 1.0
CA A:CYS196 5.0 36.9 1.0

Zinc binding site 2 out of 2 in 1ro2

Go back to Zinc Binding Sites List in 1ro2
Zinc binding site 2 out of 2 in the Bifunctional Dna Primase/Polymerase Domain of ORF904 From the Archaeal Plasmid PRN1- Triple Mutant F50M/L107M/L110M Manganese Soak


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Bifunctional Dna Primase/Polymerase Domain of ORF904 From the Archaeal Plasmid PRN1- Triple Mutant F50M/L107M/L110M Manganese Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:35.0
occ:1.00
NE2 A:HIS53 2.2 24.5 1.0
OE2 A:GLU215 2.5 36.9 1.0
O A:HOH406 2.7 40.9 1.0
CD A:GLU215 2.8 32.1 1.0
O A:HOH332 2.9 29.4 1.0
OE1 A:GLU215 3.0 36.1 1.0
CD2 A:HIS53 3.1 22.9 1.0
CE1 A:HIS53 3.3 24.1 1.0
CG A:GLU215 3.7 30.4 1.0
CG A:HIS53 4.3 21.6 1.0
ND1 A:HIS53 4.3 22.4 1.0
OE2 A:GLU52 4.4 26.9 1.0
NE1 A:TRP49 4.8 18.0 1.0
CB A:GLU215 4.9 23.6 1.0

Reference:

G.Lipps, A.O.Weinzierl, G.Von Scheven, C.Buchen, P.Cramer. Structure of A Bifunctional Dna Primase-Polymerase Nat.Struct.Mol.Biol. V. 11 157 2004.
ISSN: ISSN 1545-9993
PubMed: 14730355
DOI: 10.1038/NSMB723
Page generated: Mon Jan 25 16:12:59 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy