Zinc in PDB 1rgo: Structural Basis For Recognition of the Mrna Class II Au- Rich Element By the Tandem Zinc Finger Domain of TIS11D

The binding sites of Zinc atom in the Structural Basis For Recognition of the Mrna Class II Au- Rich Element By the Tandem Zinc Finger Domain of TIS11D (pdb code 1rgo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structural Basis For Recognition of the Mrna Class II Au- Rich Element By the Tandem Zinc Finger Domain of TIS11D, PDB code: 1rgo:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structural Basis For Recognition of the Mrna Class II Au- Rich Element By the Tandem Zinc Finger Domain of TIS11D


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Basis For Recognition of the Mrna Class II Au- Rich Element By the Tandem Zinc Finger Domain of TIS11D within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn221 b:0.0 occ:1.00 NE2 A:HIS178 2.1 0.0 1.0 SG A:CYS174 2.3 0.0 1.0 SG A:CYS168 2.3 0.0 1.0 SG A:CYS159 2.3 0.0 1.0 CD2 A:HIS178 2.9 0.0 1.0 HB2 A:CYS174 3.0 0.0 1.0 HD2 A:HIS178 3.1 0.0 1.0 CB A:CYS174 3.1 0.0 1.0 HB2 A:CYS168 3.1 0.0 1.0 CB A:CYS168 3.2 0.0 1.0 CE1 A:HIS178 3.2 0.0 1.0 HB3 A:CYS174 3.3 0.0 1.0 HB3 A:CYS168 3.4 0.0 1.0 HB2 A:CYS159 3.5 0.0 1.0 HB2 A:PHE162 3.5 0.0 1.0 CB A:CYS159 3.5 0.0 1.0 HE1 A:HIS178 3.6 0.0 1.0 H3 D:U8 3.8 0.0 1.0 HB2 A:TYR170 3.8 0.0 1.0 HB2 A:PHE176 3.9 0.0 1.0 HB3 A:CYS159 3.9 0.0 1.0 HG2 A:PRO161 4.1 0.0 1.0 CG A:HIS178 4.2 0.0 1.0 ND1 A:HIS178 4.3 0.0 1.0 H A:PHE176 4.4 0.0 1.0 CB A:PHE162 4.5 0.0 1.0 CA A:CYS174 4.5 0.0 1.0 HB3 A:PHE162 4.5 0.0 1.0 H A:PHE162 4.6 0.0 1.0 CA A:CYS168 4.6 0.0 1.0 O4 D:U8 4.6 0.0 1.0 H A:TYR170 4.6 0.0 1.0 HA A:CYS174 4.7 0.0 1.0 N3 D:U8 4.7 0.0 1.0 HA A:CYS168 4.7 0.0 1.0 O A:PHE176 4.8 0.0 1.0 HD1 A:PHE162 4.8 0.0 1.0 CA A:CYS159 4.8 0.0 1.0 CB A:TYR170 4.8 0.0 1.0 HD1 A:TYR170 4.9 0.0 1.0 HA A:CYS159 4.9 0.0 1.0 H2 D:A7 4.9 0.0 1.0 CB A:PHE176 4.9 0.0 1.0 H A:GLY171 5.0 0.0 1.0 HD1 A:PHE176 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Structural Basis For Recognition of the Mrna Class II Au- Rich Element By the Tandem Zinc Finger Domain of TIS11D


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Basis For Recognition of the Mrna Class II Au- Rich Element By the Tandem Zinc Finger Domain of TIS11D within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn222 b:0.0 occ:1.00 NE2 A:HIS216 2.1 0.0 1.0 SG A:CYS212 2.3 0.0 1.0 SG A:CYS206 2.3 0.0 1.0 SG A:CYS197 2.3 0.0 1.0 HB2 A:CYS206 3.0 0.0 1.0 HB2 A:CYS212 3.0 0.0 1.0 CD2 A:HIS216 3.0 0.0 1.0 CB A:CYS212 3.1 0.0 1.0 CB A:CYS206 3.1 0.0 1.0 CE1 A:HIS216 3.2 0.0 1.0 HD2 A:HIS216 3.2 0.0 1.0 HB3 A:CYS206 3.3 0.0 1.0 HB3 A:CYS212 3.3 0.0 1.0 HB2 A:CYS197 3.4 0.0 1.0 CB A:CYS197 3.4 0.0 1.0 HE1 A:HIS216 3.4 0.0 1.0 HB2 A:PHE200 3.5 0.0 1.0 H3 D:U4 3.6 0.0 1.0 HB3 A:CYS197 3.8 0.0 1.0 HB2 A:TYR208 3.8 0.0 1.0 HB2 A:PHE214 4.0 0.0 1.0 H A:PHE200 4.0 0.0 1.0 HB A:THR199 4.1 0.0 1.0 CG A:HIS216 4.2 0.0 1.0 ND1 A:HIS216 4.3 0.0 1.0 HD1 A:TYR208 4.4 0.0 1.0 H A:PHE214 4.4 0.0 1.0 O4 D:U4 4.5 0.0 1.0 CA A:CYS212 4.5 0.0 1.0 CB A:PHE200 4.5 0.0 1.0 CA A:CYS206 4.5 0.0 1.0 HB3 A:PHE200 4.6 0.0 1.0 N3 D:U4 4.6 0.0 1.0 H A:TYR208 4.6 0.0 1.0 HA A:CYS212 4.7 0.0 1.0 H2 D:A3 4.7 0.0 1.0 HA A:CYS206 4.7 0.0 1.0 CA A:CYS197 4.8 0.0 1.0 N A:PHE200 4.8 0.0 1.0 O A:PHE214 4.8 0.0 1.0 CB A:TYR208 4.9 0.0 1.0 HA A:CYS197 4.9 0.0 1.0

B.P.Hudson, M.A.Martinez-Yamout, H.J.Dyson, P.E.Wright. Recognition of the Mrna Au-Rich Element By the Zinc Finger Domain of TIS11D. Nat.Struct.Mol.Biol. V. 11 257 2004.
ISSN: ISSN 1545-9993
PubMed: 14981510
DOI: 10.1038/NSMB738