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Zinc in PDB 1rgd: Structure Refinement of the Glucocorticoid Receptor-Dna Binding Domain From uc(Nmr) Data By Relaxation Matrix Calculations

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure Refinement of the Glucocorticoid Receptor-Dna Binding Domain From uc(Nmr) Data By Relaxation Matrix Calculations (pdb code 1rgd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure Refinement of the Glucocorticoid Receptor-Dna Binding Domain From uc(Nmr) Data By Relaxation Matrix Calculations, PDB code: 1rgd:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1rgd

Go back to Zinc Binding Sites List in 1rgd
Zinc binding site 1 out of 2 in the Structure Refinement of the Glucocorticoid Receptor-Dna Binding Domain From uc(Nmr) Data By Relaxation Matrix Calculations


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure Refinement of the Glucocorticoid Receptor-Dna Binding Domain From uc(Nmr) Data By Relaxation Matrix Calculations within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn72

b:0.0
occ:1.00
SG A:CYS18 2.3 0.0 1.0
SG A:CYS1 2.4 0.0 1.0
SG A:CYS4 2.6 0.0 1.0
SG A:CYS21 2.6 0.0 1.0
CB A:CYS1 3.0 0.0 1.0
NH2 A:ARG57 3.1 0.0 1.0
N A:CYS18 3.6 0.0 1.0
CB A:CYS18 3.6 0.0 1.0
CZ A:ARG57 3.9 0.0 1.0
NE A:ARG57 3.9 0.0 1.0
CA A:CYS18 4.0 0.0 1.0
CB A:CYS4 4.0 0.0 1.0
CB A:CYS21 4.2 0.0 1.0
CA A:CYS1 4.5 0.0 1.0
CB A:ASP6 4.5 0.0 1.0
O A:CYS18 4.6 0.0 1.0
N A:CYS4 4.6 0.0 1.0
O A:ASP6 4.6 0.0 1.0
CB A:THR17 4.6 0.0 1.0
C A:THR17 4.7 0.0 1.0
CA A:CYS4 4.7 0.0 1.0
C A:CYS18 4.8 0.0 1.0
CA A:THR17 4.9 0.0 1.0
OG A:SER20 4.9 0.0 1.0
OD2 A:ASP6 4.9 0.0 1.0
NH1 A:ARG57 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1rgd

Go back to Zinc Binding Sites List in 1rgd
Zinc binding site 2 out of 2 in the Structure Refinement of the Glucocorticoid Receptor-Dna Binding Domain From uc(Nmr) Data By Relaxation Matrix Calculations


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure Refinement of the Glucocorticoid Receptor-Dna Binding Domain From uc(Nmr) Data By Relaxation Matrix Calculations within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn73

b:0.0
occ:1.00
CB A:CYS56 2.0 0.0 1.0
SG A:CYS43 2.5 0.0 1.0
SG A:CYS37 2.5 0.0 1.0
CB A:CYS43 2.7 0.0 1.0
SG A:CYS56 2.7 0.0 1.0
SG A:CYS53 2.9 0.0 1.0
CB A:CYS53 3.1 0.0 1.0
CA A:CYS56 3.3 0.0 1.0
CB A:CYS37 3.7 0.0 1.0
N A:CYS56 3.7 0.0 1.0
CA A:CYS43 3.8 0.0 1.0
O A:CYS53 3.8 0.0 1.0
CA A:CYS37 4.2 0.0 1.0
N A:ALA38 4.2 0.0 1.0
CA A:CYS53 4.3 0.0 1.0
N A:CYS43 4.3 0.0 1.0
CD1 A:ILE45 4.4 0.0 1.0
C A:CYS43 4.4 0.0 1.0
C A:CYS53 4.5 0.0 1.0
C A:CYS56 4.5 0.0 1.0
CB A:ALA38 4.7 0.0 1.0
O A:CYS43 4.8 0.0 1.0
C A:CYS37 4.9 0.0 1.0
N A:CYS53 4.9 0.0 1.0
C A:ALA55 5.0 0.0 1.0

Reference:

M.A.Van Tilborg, A.M.Bonvin, K.Hard, A.L.Davis, B.Maler, R.Boelens, K.R.Yamamoto, R.Kaptein. Structure Refinement of the Glucocorticoid Receptor-Dna Binding Domain From uc(Nmr) Data By Relaxation Matrix Calculations. J.Mol.Biol. V. 247 689 1995.
ISSN: ISSN 0022-2836
PubMed: 7723024
DOI: 10.1006/JMBI.1995.0173
Page generated: Wed Dec 16 03:02:54 2020

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