Zinc in PDB 1rgd: Structure Refinement of the Glucocorticoid Receptor-Dna Binding Domain From uc(Nmr) Data By Relaxation Matrix Calculations

The binding sites of Zinc atom in the Structure Refinement of the Glucocorticoid Receptor-Dna Binding Domain From uc(Nmr) Data By Relaxation Matrix Calculations (pdb code 1rgd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure Refinement of the Glucocorticoid Receptor-Dna Binding Domain From uc(Nmr) Data By Relaxation Matrix Calculations, PDB code: 1rgd:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure Refinement of the Glucocorticoid Receptor-Dna Binding Domain From uc(Nmr) Data By Relaxation Matrix Calculations


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure Refinement of the Glucocorticoid Receptor-Dna Binding Domain From uc(Nmr) Data By Relaxation Matrix Calculations within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn72 b:0.0 occ:1.00 SG A:CYS18 2.3 0.0 1.0 SG A:CYS1 2.4 0.0 1.0 SG A:CYS4 2.6 0.0 1.0 SG A:CYS21 2.6 0.0 1.0 CB A:CYS1 3.0 0.0 1.0 NH2 A:ARG57 3.1 0.0 1.0 N A:CYS18 3.6 0.0 1.0 CB A:CYS18 3.6 0.0 1.0 CZ A:ARG57 3.9 0.0 1.0 NE A:ARG57 3.9 0.0 1.0 CA A:CYS18 4.0 0.0 1.0 CB A:CYS4 4.0 0.0 1.0 CB A:CYS21 4.2 0.0 1.0 CA A:CYS1 4.5 0.0 1.0 CB A:ASP6 4.5 0.0 1.0 O A:CYS18 4.6 0.0 1.0 N A:CYS4 4.6 0.0 1.0 O A:ASP6 4.6 0.0 1.0 CB A:THR17 4.6 0.0 1.0 C A:THR17 4.7 0.0 1.0 CA A:CYS4 4.7 0.0 1.0 C A:CYS18 4.8 0.0 1.0 CA A:THR17 4.9 0.0 1.0 OG A:SER20 4.9 0.0 1.0 OD2 A:ASP6 4.9 0.0 1.0 NH1 A:ARG57 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Structure Refinement of the Glucocorticoid Receptor-Dna Binding Domain From uc(Nmr) Data By Relaxation Matrix Calculations


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure Refinement of the Glucocorticoid Receptor-Dna Binding Domain From uc(Nmr) Data By Relaxation Matrix Calculations within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn73 b:0.0 occ:1.00 CB A:CYS56 2.0 0.0 1.0 SG A:CYS43 2.5 0.0 1.0 SG A:CYS37 2.5 0.0 1.0 CB A:CYS43 2.7 0.0 1.0 SG A:CYS56 2.7 0.0 1.0 SG A:CYS53 2.9 0.0 1.0 CB A:CYS53 3.1 0.0 1.0 CA A:CYS56 3.3 0.0 1.0 CB A:CYS37 3.7 0.0 1.0 N A:CYS56 3.7 0.0 1.0 CA A:CYS43 3.8 0.0 1.0 O A:CYS53 3.8 0.0 1.0 CA A:CYS37 4.2 0.0 1.0 N A:ALA38 4.2 0.0 1.0 CA A:CYS53 4.3 0.0 1.0 N A:CYS43 4.3 0.0 1.0 CD1 A:ILE45 4.4 0.0 1.0 C A:CYS43 4.4 0.0 1.0 C A:CYS53 4.5 0.0 1.0 C A:CYS56 4.5 0.0 1.0 CB A:ALA38 4.7 0.0 1.0 O A:CYS43 4.8 0.0 1.0 C A:CYS37 4.9 0.0 1.0 N A:CYS53 4.9 0.0 1.0 C A:ALA55 5.0 0.0 1.0

M.A.Van Tilborg, A.M.Bonvin, K.Hard, A.L.Davis, B.Maler, R.Boelens, K.R.Yamamoto, R.Kaptein. Structure Refinement of the Glucocorticoid Receptor-Dna Binding Domain From uc(Nmr) Data By Relaxation Matrix Calculations. J.Mol.Biol. V. 247 689 1995.
ISSN: ISSN 0022-2836
PubMed: 7723024
DOI: 10.1006/JMBI.1995.0173