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Zinc in PDB 1rfh: Solution Structure of the C1 Domain of NORE1, A Novel Ras Effector

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the C1 Domain of NORE1, A Novel Ras Effector (pdb code 1rfh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the C1 Domain of NORE1, A Novel Ras Effector, PDB code: 1rfh:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1rfh

Go back to Zinc Binding Sites List in 1rfh
Zinc binding site 1 out of 2 in the Solution Structure of the C1 Domain of NORE1, A Novel Ras Effector


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the C1 Domain of NORE1, A Novel Ras Effector within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1

b:2.1
occ:1.00
HB2 A:HIS154 2.2 2.5 1.0
ND1 A:HIS154 2.2 2.9 1.0
SG A:CYS157 2.3 2.3 1.0
HD23 A:LEU134 2.5 1.9 1.0
SG A:CYS132 2.5 1.9 1.0
SG A:CYS135 2.5 2.0 1.0
CG A:HIS154 3.0 3.1 1.0
CB A:HIS154 3.0 2.8 1.0
HB2 A:CYS157 3.3 2.2 1.0
H A:HIS154 3.3 1.7 1.0
CB A:CYS157 3.4 2.1 1.0
CE1 A:HIS154 3.4 3.4 1.0
CD2 A:LEU134 3.5 1.4 1.0
HB3 A:HIS154 3.6 3.1 1.0
CB A:CYS132 3.6 2.6 1.0
HB2 A:CYS132 3.6 2.8 1.0
HB3 A:CYS157 3.7 1.9 1.0
HD22 A:LEU134 3.7 1.7 1.0
HB3 A:CYS132 3.7 2.8 1.0
HE1 A:HIS154 3.8 3.5 1.0
HB2 A:CYS135 3.9 2.6 1.0
CB A:CYS135 3.9 2.3 1.0
H A:CYS135 4.0 1.9 1.0
N A:HIS154 4.0 1.8 1.0
HD21 A:LEU134 4.0 1.7 1.0
CA A:HIS154 4.1 2.5 1.0
CD2 A:HIS154 4.2 3.6 1.0
HB3 A:LEU134 4.3 1.2 1.0
HG A:LEU134 4.4 1.5 1.0
NE2 A:HIS154 4.4 3.8 1.0
CG A:LEU134 4.5 1.4 1.0
HB3 A:CYS135 4.6 2.5 1.0
N A:CYS135 4.6 2.0 1.0
CA A:CYS157 4.7 2.7 1.0
HA A:HIS154 4.8 2.8 1.0
H A:CYS157 4.9 3.0 1.0
CA A:CYS135 5.0 2.3 1.0
CB A:LEU134 5.0 1.4 1.0

Zinc binding site 2 out of 2 in 1rfh

Go back to Zinc Binding Sites List in 1rfh
Zinc binding site 2 out of 2 in the Solution Structure of the C1 Domain of NORE1, A Novel Ras Effector


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the C1 Domain of NORE1, A Novel Ras Effector within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2

b:4.0
occ:1.00
HA A:HIS118 1.9 3.7 1.0
ND1 A:HIS118 2.2 4.0 1.0
SG A:CYS165 2.3 4.8 1.0
SG A:CYS149 2.5 4.5 1.0
SG A:CYS146 2.5 2.9 1.0
HA A:CYS165 2.8 5.2 1.0
HB3 A:ASN148 2.8 4.5 1.0
CA A:HIS118 2.9 3.7 1.0
HB2 A:ASN148 3.0 3.7 1.0
CG A:HIS118 3.1 3.6 1.0
H A:ARG119 3.2 3.0 1.0
CB A:HIS118 3.2 3.4 1.0
HB3 A:HIS118 3.3 3.0 1.0
CE1 A:HIS118 3.3 4.2 1.0
CB A:CYS165 3.3 5.6 1.0
CB A:ASN148 3.4 4.2 1.0
HB2 A:CYS165 3.5 5.6 1.0
CA A:CYS165 3.6 5.6 1.0
HE1 A:HIS118 3.6 4.6 1.0
N A:HIS118 3.7 4.3 1.0
HD21 A:ASN148 3.9 4.2 1.0
N A:ARG119 3.9 3.0 1.0
C A:HIS118 4.0 3.3 1.0
HG3 A:LYS150 4.0 3.2 1.0
H A:LYS150 4.0 3.6 1.0
O A:GLY117 4.1 4.5 1.0
CB A:CYS149 4.1 5.0 1.0
H A:CYS149 4.2 3.9 1.0
N A:CYS149 4.2 4.4 1.0
C A:GLY117 4.2 4.7 1.0
H A:ARG166 4.2 5.8 1.0
C A:ASN148 4.2 4.7 1.0
H A:HIS118 4.3 4.5 1.0
CD2 A:HIS118 4.3 3.5 1.0
CB A:CYS146 4.3 2.1 1.0
HG2 A:ARG119 4.3 2.9 1.0
HB3 A:CYS165 4.3 6.1 1.0
HB2 A:HIS118 4.3 3.6 1.0
HB3 A:CYS149 4.3 5.4 1.0
NE2 A:HIS118 4.4 3.9 1.0
CA A:ASN148 4.4 4.3 1.0
N A:CYS165 4.5 5.7 1.0
H A:ASN148 4.5 3.4 1.0
CG A:ASN148 4.5 4.3 1.0
HB2 A:CYS146 4.6 1.9 1.0
ND2 A:ASN148 4.6 4.3 1.0
C A:CYS165 4.6 6.2 1.0
HB3 A:CYS146 4.7 2.1 1.0
CA A:CYS149 4.8 4.7 1.0
O A:ASN148 4.8 5.2 1.0
N A:ARG166 4.8 6.2 1.0
HG2 A:LYS150 4.8 3.5 1.0
H A:PHE120 4.8 2.1 1.0
N A:ASN148 4.8 3.8 1.0
H A:CYS165 4.8 5.8 1.0
HB2 A:CYS149 4.9 5.1 1.0
CG A:LYS150 4.9 3.1 1.0
N A:LYS150 4.9 3.7 1.0

Reference:

E.Guiberman, S.Wohlgemuth, C.Herrmann, S.Harjes, K.H.Mueller, P.Bayer. The Solution Structure of C1 Domain of NORE1 To Be Published.
Page generated: Fri Sep 25 23:19:05 2020
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