Zinc in PDB 1r0n: Crystal Structure of Heterodimeric Ecdsyone Receptor Dna Binding Complex

The structure of Crystal Structure of Heterodimeric Ecdsyone Receptor Dna Binding Complex, PDB code: 1r0n was solved by S.Devarakonda, J.M.Harp, Y.Kim, A.Ozyhar, F.Rastinejad, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.99 / 2.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	55.620, 60.260, 115.000, 90.00, 90.00, 90.00
R / Rfree (%)	23.3 / 29.2

The binding sites of Zinc atom in the Crystal Structure of Heterodimeric Ecdsyone Receptor Dna Binding Complex (pdb code 1r0n). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of Heterodimeric Ecdsyone Receptor Dna Binding Complex, PDB code: 1r0n:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of Heterodimeric Ecdsyone Receptor Dna Binding Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Heterodimeric Ecdsyone Receptor Dna Binding Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn177 b:51.9 occ:1.00 SG A:CYS101 2.4 59.0 1.0 SG A:CYS118 2.4 42.7 1.0 SG A:CYS104 2.7 49.1 1.0 SG A:CYS121 2.7 43.4 1.0 CB A:CYS104 3.0 50.4 1.0 CB A:CYS121 3.4 43.3 1.0 CB A:CYS101 3.4 60.7 1.0 N A:CYS104 3.8 54.3 1.0 CB A:CYS118 3.8 47.4 1.0 NH1 A:ARG150 3.9 33.1 1.0 CA A:CYS104 4.0 52.1 1.0 N A:CYS121 4.2 46.2 1.0 N A:CYS118 4.3 49.0 1.0 C A:ILE103 4.3 56.1 1.0 CB A:ASP106 4.3 58.6 1.0 CA A:CYS121 4.4 47.1 1.0 CB A:ILE103 4.4 56.2 1.0 CA A:CYS118 4.7 47.7 1.0 NH2 A:ARG157 4.7 53.2 1.0 C A:CYS104 4.8 51.6 1.0 CA A:ILE103 4.8 54.6 1.0 CD A:ARG150 4.8 38.1 1.0 CA A:CYS101 4.9 61.0 1.0 N A:ASP106 4.9 56.0 1.0 N A:GLY105 4.9 52.0 1.0 CZ A:ARG150 4.9 35.5 1.0 O A:ILE103 5.0 58.4 1.0 N A:ILE103 5.0 55.2 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of Heterodimeric Ecdsyone Receptor Dna Binding Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Heterodimeric Ecdsyone Receptor Dna Binding Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn178 b:65.3 occ:1.00 SG A:CYS137 2.2 79.5 1.0 SG A:CYS156 2.4 60.9 1.0 SG A:CYS153 2.4 54.8 1.0 SG A:CYS143 2.6 51.3 1.0 CB A:CYS137 3.2 81.2 1.0 CB A:CYS143 3.3 51.0 1.0 CB A:CYS153 3.6 55.8 1.0 CB A:CYS156 3.7 60.3 1.0 CA A:CYS137 3.9 83.4 1.0 O A:ASN140 4.2 82.8 1.0 N A:ARG138 4.3 85.1 1.0 N A:CYS143 4.3 61.5 1.0 CA A:CYS143 4.4 55.0 1.0 N A:CYS156 4.4 60.6 1.0 C A:CYS137 4.5 83.8 1.0 CA A:LYS141 4.6 79.9 1.0 C A:ASN140 4.6 83.0 1.0 N A:ASP139 4.6 85.7 1.0 CA A:CYS156 4.7 59.8 1.0 C A:LYS141 4.7 78.2 1.0 CD2 A:TYR155 4.8 65.8 1.0 N A:LYS141 4.8 81.6 1.0 CB A:TYR155 4.8 63.2 1.0 O A:LYS141 4.8 79.1 1.0 N A:ASN140 4.9 84.8 1.0 CA A:CYS153 5.0 54.9 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of Heterodimeric Ecdsyone Receptor Dna Binding Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Heterodimeric Ecdsyone Receptor Dna Binding Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn150 b:47.3 occ:1.00 SG B:CYS201 2.2 43.8 1.0 SG B:CYS221 2.3 37.1 1.0 SG B:CYS204 2.5 37.6 1.0 SG B:CYS218 2.8 29.8 1.0 CB B:CYS221 3.3 40.6 1.0 CB B:CYS201 3.3 40.9 1.0 N B:CYS204 3.3 40.0 1.0 CB B:CYS204 3.4 41.7 1.0 CB B:CYS218 3.5 31.6 1.0 CB B:VAL203 3.7 42.9 1.0 CA B:CYS204 3.9 38.9 1.0 N B:CYS218 4.0 41.8 1.0 CG1 B:VAL203 4.1 39.8 1.0 C B:VAL203 4.3 43.5 1.0 NH1 B:ARG250 4.3 32.1 1.0 CA B:VAL203 4.3 42.7 1.0 CA B:CYS218 4.4 36.1 1.0 N B:VAL203 4.4 43.1 1.0 N B:CYS221 4.4 42.5 1.0 CA B:CYS221 4.5 41.0 1.0 CB B:ASP206 4.6 48.4 1.0 N B:GLY205 4.6 43.5 1.0 C B:CYS204 4.7 42.4 1.0 CA B:CYS201 4.7 45.0 1.0 CD B:ARG250 4.8 37.2 1.0 N B:ASP206 4.8 46.9 1.0 CG2 B:VAL203 4.9 43.7 1.0 C B:CYS201 4.9 44.7 1.0 O B:CYS201 5.0 44.8 1.0 C B:CYS218 5.0 37.9 1.0 O B:CYS218 5.0 35.9 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of Heterodimeric Ecdsyone Receptor Dna Binding Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Heterodimeric Ecdsyone Receptor Dna Binding Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn152 b:70.3 occ:1.00 SG B:CYS256 2.3 53.4 1.0 SG B:CYS243 2.4 60.5 1.0 SG B:CYS253 2.4 57.3 1.0 SG B:CYS237 2.7 64.9 1.0 CB B:CYS256 3.3 49.2 1.0 CB B:CYS243 3.4 61.9 1.0 CB B:CYS253 3.5 52.4 1.0 CB B:CYS237 3.7 66.8 1.0 N B:CYS243 3.9 65.6 1.0 CA B:ARG241 4.0 76.6 1.0 N B:ALA242 4.1 72.8 1.0 N B:CYS256 4.2 47.4 1.0 O B:GLY240 4.3 77.7 1.0 CA B:CYS256 4.3 46.9 1.0 CA B:CYS243 4.3 62.5 1.0 CD1 B:PHE239 4.4 77.3 1.0 C B:ARG241 4.5 75.3 1.0 CA B:CYS237 4.6 67.8 1.0 N B:ARG241 4.6 76.2 1.0 C B:GLY240 4.7 76.6 1.0 CA B:CYS253 4.9 51.7 1.0 CE1 B:PHE239 4.9 77.1 1.0

S.Devarakonda, J.M.Harp, Y.Kim, A.Ozyhar, F.Rastinejad. Structure of the Heterodimeric Ecdysone Receptor Dna-Binding Complex Embo J. V. 22 5827 2003.
ISSN: ISSN 0261-4189
PubMed: 14592980
DOI: 10.1093/EMBOJ/CDG569