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Zinc in PDB 1qwy: Latent Lytm at 1.3 A Resolution

Enzymatic activity of Latent Lytm at 1.3 A Resolution

All present enzymatic activity of Latent Lytm at 1.3 A Resolution:
3.4.24.75;

Protein crystallography data

The structure of Latent Lytm at 1.3 A Resolution, PDB code: 1qwy was solved by S.G.Odintsov, I.Sabala, M.Marcyjaniak, M.Bochtler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.332, 53.232, 51.603, 90.00, 104.02, 90.00
R / Rfree (%) 16.3 / 18.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Latent Lytm at 1.3 A Resolution (pdb code 1qwy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Latent Lytm at 1.3 A Resolution, PDB code: 1qwy:

Zinc binding site 1 out of 1 in 1qwy

Go back to Zinc Binding Sites List in 1qwy
Zinc binding site 1 out of 1 in the Latent Lytm at 1.3 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Latent Lytm at 1.3 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn400

b:16.3
occ:1.00
OD1 A:ASN117 1.9 10.4 1.0
OD1 A:ASP214 2.0 9.7 1.0
ND1 A:HIS293 2.0 9.2 1.0
NE2 A:HIS210 2.0 9.7 1.0
CG A:ASP214 2.8 8.8 1.0
OD2 A:ASP214 2.9 10.0 1.0
CE1 A:HIS293 2.9 10.0 1.0
CG A:ASN117 3.0 8.9 1.0
CE1 A:HIS210 3.0 8.9 1.0
CG A:HIS293 3.1 8.6 1.0
CD2 A:HIS210 3.1 10.2 1.0
ND2 A:ASN117 3.4 11.2 1.0
CB A:HIS293 3.5 8.4 1.0
NE2 A:HIS293 4.1 9.6 1.0
NE2 A:HIS291 4.1 10.5 1.0
ND1 A:HIS210 4.1 9.2 1.0
CD2 A:HIS293 4.2 8.5 1.0
CB A:ASP214 4.2 8.3 1.0
CG A:HIS210 4.2 9.8 1.0
CB A:ASN117 4.2 9.2 1.0
O A:ASN117 4.3 9.9 1.0
CA A:HIS293 4.4 8.5 1.0
C A:ASN117 4.4 9.3 1.0
OH A:TYR204 4.5 11.4 1.0
CD2 A:HIS291 4.6 9.6 1.0
CE1 A:TYR204 4.6 11.8 1.0
N A:ASP214 4.6 8.7 1.0
CA A:ASP214 4.7 8.6 1.0
C A:VAL213 4.7 8.9 1.0
CA A:ASN117 4.8 9.3 1.0
O A:VAL213 4.8 9.1 1.0
N A:ASN118 4.8 8.7 1.0
OD1 A:ASN118 4.9 9.4 1.0
C A:GLY212 4.9 9.8 1.0
O A:GLY212 4.9 10.2 1.0

Reference:

S.G.Odintsov, I.Sabala, M.Marcyjaniak, M.Bochtler. Latent Lytm at 1.3A Resolution. J.Mol.Biol. V. 335 775 2004.
ISSN: ISSN 0022-2836
PubMed: 14687573
DOI: 10.1016/J.JMB.2003.11.009
Page generated: Mon Jan 25 16:12:29 2021

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