Zinc in PDB 1qhd: Crystal Structure of VP6, the Major Capsid Protein of Group A Rotavirus

The structure of Crystal Structure of VP6, the Major Capsid Protein of Group A Rotavirus, PDB code: 1qhd was solved by M.Mathieu, I.Petitpas, F.A.Rey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.00 / 1.95
Space group	P 41 3 2
Cell size a, b, c (Å), α, β, γ (°)	157.780, 157.780, 157.780, 90.00, 90.00, 90.00
R / Rfree (%)	18.8 / 22

The structure of Crystal Structure of VP6, the Major Capsid Protein of Group A Rotavirus also contains other interesting chemical elements:

Chlorine	(Cl)	1 atom
Calcium	(Ca)	5 atoms

The binding sites of Zinc atom in the Crystal Structure of VP6, the Major Capsid Protein of Group A Rotavirus (pdb code 1qhd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of VP6, the Major Capsid Protein of Group A Rotavirus, PDB code: 1qhd:

Zinc binding site 1 out of 1 in the Crystal Structure of VP6, the Major Capsid Protein of Group A Rotavirus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of VP6, the Major Capsid Protein of Group A Rotavirus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:15.4 occ:0.33 NE2 A:HIS153 2.0 24.4 1.0 CL A:CL502 2.2 27.0 0.3 CE1 A:HIS153 2.9 17.1 1.0 CD2 A:HIS153 3.0 17.7 1.0 ND1 A:HIS153 4.0 15.9 1.0 CG A:HIS153 4.1 19.6 1.0 CD A:LYS154 4.4 24.3 1.0

M.Mathieu, I.Petitpas, J.Navaza, J.Lepault, E.Kohli, P.Pothier, B.V.Prasad, J.Cohen, F.A.Rey. Atomic Structure of the Major Capsid Protein of Rotavirus: Implications For the Architecture of the Virion. Embo J. V. 20 1485 2001.
ISSN: ISSN 0261-4189
PubMed: 11285213
DOI: 10.1093/EMBOJ/20.7.1485