Zinc in PDB 1q9u: Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus

The structure of Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus, PDB code: 1q9u was solved by Y.Kim, H.Li, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.43 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	43.185, 47.268, 110.087, 90.00, 90.00, 90.00
R / Rfree (%)	19.2 / 24.1

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 17;

Binding sites:

The binding sites of Zinc atom in the Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus (pdb code 1q9u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 17 binding sites of Zinc where determined in the Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus, PDB code: 1q9u:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 17 in the Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:12.3 occ:0.95 OE2 A:GLU26 2.1 17.9 1.0 CD A:GLU26 2.8 19.6 1.0 OE1 A:GLU26 2.8 19.8 1.0 NH2 A:ARG125 4.1 21.5 1.0 NH1 A:ARG125 4.2 24.1 1.0 CG A:GLU26 4.3 17.7 1.0 CZ A:ARG125 4.6 21.3 1.0

Zinc binding site 2 out of 17 in the Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn403 b:26.9 occ:0.42 OD2 A:ASP114 2.1 33.6 1.0 CG A:ASP114 2.7 30.8 1.0 CB A:ASP114 3.1 23.7 1.0 ZN A:ZN411 3.4 34.8 0.5 OD1 A:ASP114 3.6 36.1 1.0 O A:HOH521 4.2 32.8 1.0 CA A:ASP114 4.4 20.2 1.0

Zinc binding site 3 out of 17 in the Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn407 b:40.5 occ:0.53 O A:HOH518 2.4 58.7 1.0 OE2 A:GLU20 2.4 33.2 1.0 O A:HOH517 2.4 49.9 1.0 O A:HOH519 2.5 54.8 1.0 O A:HOH468 2.6 46.0 1.0 O A:HOH570 2.8 52.0 1.0 OE1 A:GLU20 3.0 31.0 1.0 CD A:GLU20 3.0 30.4 1.0 ZN A:ZN413 3.1 54.3 0.5 CG A:GLU20 4.4 25.8 1.0 O A:HOH577 4.4 48.5 1.0

Zinc binding site 4 out of 17 in the Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn411 b:34.8 occ:0.48 OD2 A:ASP114 2.5 33.6 1.0 OD1 A:ASP114 2.5 36.1 1.0 CG A:ASP114 2.8 30.8 1.0 ZN A:ZN403 3.4 26.9 0.4 O A:HOH521 3.7 32.8 1.0 O A:HOH472 4.2 22.8 1.0 CB A:ASP114 4.3 23.7 1.0 CZ A:ARG118 4.5 35.0 0.4 NE A:ARG118 4.6 33.1 0.5 NH2 A:ARG118 4.7 36.5 0.4 NH1 A:ARG118 4.8 36.7 0.4 CD A:ARG118 4.9 26.9 0.5 OE2 A:GLU61 5.0 35.1 1.0

Zinc binding site 5 out of 17 in the Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn412 b:46.2 occ:0.56 O A:HOH484 2.5 43.8 1.0 NE2 A:HIS3 2.6 17.8 1.0 O B:HOH535 2.6 46.1 1.0 CE A:MET1 3.0 44.5 1.0 O B:HOH536 3.1 47.0 1.0 CD2 A:HIS3 3.4 16.9 1.0 CE1 A:HIS3 3.6 16.5 1.0 CD1 B:LEU71 4.0 19.3 1.0 CG A:MET1 4.0 41.2 1.0 SD A:MET1 4.1 46.7 1.0 O A:HOH564 4.2 41.4 1.0 CG A:HIS3 4.6 15.4 1.0 ND1 A:HIS3 4.7 16.3 1.0 O B:HOH479 5.0 39.2 1.0

Zinc binding site 6 out of 17 in the Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn413 b:54.3 occ:0.53 OE1 A:GLU20 2.5 31.0 1.0 OE2 A:GLU20 2.6 33.2 1.0 CD A:GLU20 2.7 30.4 1.0 O A:HOH519 2.9 54.8 1.0 ZN A:ZN407 3.1 40.5 0.5 O A:HOH518 3.6 58.7 1.0 NE2 A:GLN33 3.9 29.5 1.0 CG A:GLU20 4.0 25.8 1.0 O A:HOH517 4.0 49.9 1.0 O A:HOH468 4.6 46.0 1.0 CB A:GLU20 4.7 19.9 1.0 O A:HOH486 4.8 30.8 1.0 O A:HOH438 4.8 27.2 1.0 CB A:VAL30 4.9 17.0 1.0

Zinc binding site 7 out of 17 in the Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn417 b:76.4 occ:0.87 O A:HOH536 2.3 45.0 1.0 O A:HOH537 2.5 36.0 1.0 OD2 A:CSD57 3.0 23.2 0.5 N A:ASN58 3.1 18.0 1.0 OD1 A:CSD57 3.4 28.0 0.7 O A:ASN58 3.4 15.8 1.0 CA A:CSD57 3.7 18.4 0.5 SG A:CME78 3.7 19.4 1.0 CA A:CSD57 3.8 19.6 0.5 C A:CSD57 3.9 17.5 0.4 CE1 A:PHE28 3.9 19.2 1.0 C A:CSD57 3.9 17.9 0.6 CA A:ASN58 3.9 17.6 1.0 C A:ASN58 4.0 17.5 1.0 CB A:ASN58 4.0 19.6 1.0 N A:ALA62 4.1 16.8 1.0 CB A:GLU61 4.2 22.4 1.0 SG A:CSD57 4.2 22.6 0.7 CB A:CSD57 4.3 19.9 0.4 SG A:CSD57 4.3 27.1 0.3 CD1 A:PHE28 4.3 17.6 1.0 CB A:ALA62 4.4 18.6 1.0 O A:VAL56 4.4 16.4 1.0 OD2 A:CSD57 4.4 26.4 0.5 CA A:ALA62 4.5 15.0 1.0 CB A:CSD57 4.7 22.3 0.6 C A:GLU61 4.7 17.1 1.0 N A:CSD57 4.8 17.2 0.5 N A:CSD57 4.8 17.5 0.5 OD1 A:CSD57 4.8 24.4 0.3 CB A:CME78 4.9 16.2 1.0 CD2 A:LEU76 5.0 15.8 1.0 CZ A:PHE28 5.0 19.3 1.0 CA A:GLU61 5.0 18.3 1.0

Zinc binding site 8 out of 17 in the Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn402 b:17.9 occ:0.95 OE2 B:GLU14 2.0 21.5 1.0 OE1 B:GLU17 2.1 17.5 0.6 O B:HOH419 2.2 28.9 1.0 OE2 B:GLU17 2.4 20.6 0.5 CD B:GLU17 2.5 16.5 0.7 CD B:GLU14 2.8 21.3 1.0 OE1 B:GLU14 2.9 23.1 1.0 O B:HOH485 3.2 38.6 1.0 CG B:GLU17 4.0 16.4 0.5 O B:HOH529 4.0 37.9 1.0 CG B:GLU14 4.2 19.1 1.0 CG B:GLU17 4.3 18.6 0.5 CB B:GLU17 4.6 14.5 0.5 CB B:GLU17 4.7 16.1 0.5

Zinc binding site 9 out of 17 in the Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn404 b:29.7 occ:0.50 NH1 B:ARG118 2.3 26.2 1.0 OE2 B:GLU61 2.4 34.7 1.0 CD B:GLU61 2.8 28.1 1.0 CD B:ARG118 3.0 24.7 1.0 CZ B:ARG118 3.1 28.5 1.0 OE1 B:GLU61 3.2 29.5 1.0 NE B:ARG118 3.4 28.4 1.0 O B:HOH436 3.6 30.7 1.0 CG B:GLU61 3.8 23.9 1.0 NH2 B:ARG64 4.1 18.1 1.0 NH2 B:ARG118 4.2 27.8 1.0 CG B:ARG118 4.4 19.9 1.0 CB B:ASP114 4.8 14.3 1.0 CZ B:ARG64 4.9 21.9 1.0 NE B:ARG64 5.0 22.3 1.0

Zinc binding site 10 out of 17 in the Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Crystal Structure of Uncharacterized Conserved Protein DUF302 From Bacillus Stearothermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn405 b:36.2 occ:0.56 O B:HOH422 2.8 19.9 1.0 O B:HOH564 3.8 49.8 1.0 OD1 B:ASN13 3.9 24.4 1.0 O B:HOH494 4.0 48.2 1.0 CG B:ASN13 4.4 23.2 1.0 ND2 B:ASN13 4.6 21.0 1.0 O B:HOH511 4.8 31.6 1.0

Y.Kim, H.Li, A.Joachimiak. Crystal Structure Analysis of Zinc-Binding, Uncharacterized Protein From Bacillus Stearothermophilus To Be Published.