Zinc in PDB 1pgu: Yeast Actin Interacting Protein 1 (AIP1), Se-Met Protein, Monoclinic Crystal Form

The structure of Yeast Actin Interacting Protein 1 (AIP1), Se-Met Protein, Monoclinic Crystal Form, PDB code: 1pgu was solved by W.C.Voegtli, A.Y.Madrona, D.K.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.56 / 2.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	60.800, 154.530, 69.000, 90.00, 90.65, 90.00
R / Rfree (%)	20.2 / 25.7

The binding sites of Zinc atom in the Yeast Actin Interacting Protein 1 (AIP1), Se-Met Protein, Monoclinic Crystal Form (pdb code 1pgu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Yeast Actin Interacting Protein 1 (AIP1), Se-Met Protein, Monoclinic Crystal Form, PDB code: 1pgu:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Yeast Actin Interacting Protein 1 (AIP1), Se-Met Protein, Monoclinic Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Yeast Actin Interacting Protein 1 (AIP1), Se-Met Protein, Monoclinic Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn616 b:15.0 occ:1.00 NE2 B:HIS328 2.0 12.7 1.0 OD2 A:ASP370 2.1 12.0 1.0 ND1 A:HIS368 2.1 14.4 1.0 OE1 B:GLU330 2.1 21.6 1.0 CG A:ASP370 2.9 15.2 1.0 CD B:GLU330 2.9 20.7 1.0 CE1 B:HIS328 3.0 12.2 1.0 OD1 A:ASP370 3.0 16.7 1.0 CG A:HIS368 3.0 15.2 1.0 CD2 B:HIS328 3.1 12.6 1.0 CE1 A:HIS368 3.1 16.4 1.0 CB A:HIS368 3.3 12.6 1.0 CG B:GLU330 3.4 20.4 1.0 CB B:GLU330 3.8 18.0 1.0 OE2 B:GLU330 3.8 23.3 1.0 CA A:HIS368 3.9 14.1 1.0 O A:HOH663 4.1 13.3 1.0 ND1 B:HIS328 4.1 13.6 1.0 CG B:HIS328 4.2 13.8 1.0 CD2 A:HIS368 4.2 17.2 1.0 NE2 A:HIS368 4.2 17.0 1.0 CB A:ASP370 4.3 13.3 1.0 O A:HOH832 4.5 21.7 1.0 N A:GLN369 4.6 16.1 1.0 OH A:TYR386 4.6 19.8 1.0 C A:HIS368 4.8 13.3 1.0 CA A:GLY399 4.8 13.9 1.0 N A:ASP370 4.8 15.9 1.0 CA B:GLU330 5.0 16.9 1.0 N B:GLU330 5.0 16.1 1.0

Zinc binding site 2 out of 2 in the Yeast Actin Interacting Protein 1 (AIP1), Se-Met Protein, Monoclinic Crystal Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Yeast Actin Interacting Protein 1 (AIP1), Se-Met Protein, Monoclinic Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn616 b:18.9 occ:1.00 OE2 A:GLU330 2.1 14.3 1.0 ND1 B:HIS368 2.2 16.9 1.0 OD2 B:ASP370 2.3 11.0 1.0 CE1 A:HIS328 2.3 15.5 1.0 OD1 B:ASP370 2.9 12.5 1.0 CD A:GLU330 2.9 16.7 1.0 CG B:ASP370 2.9 11.8 1.0 CG B:HIS368 3.0 17.3 1.0 NE2 A:HIS328 3.1 18.5 1.0 CB B:HIS368 3.2 13.6 1.0 CE1 B:HIS368 3.3 17.0 1.0 ND1 A:HIS328 3.3 19.0 1.0 CB A:GLU330 3.6 17.2 1.0 CG A:GLU330 3.6 16.2 1.0 OE1 A:GLU330 3.7 18.1 1.0 CA B:HIS368 3.8 15.3 1.0 O A:HOH637 4.1 9.0 1.0 O B:HOH667 4.1 13.8 1.0 CD2 B:HIS368 4.2 17.5 1.0 NE2 B:HIS368 4.3 16.9 1.0 CD2 A:HIS328 4.4 18.9 1.0 CB B:ASP370 4.4 13.3 1.0 CG A:HIS328 4.5 17.9 1.0 N B:GLN369 4.5 14.9 1.0 O B:HOH737 4.5 16.4 1.0 C B:HIS368 4.7 15.3 1.0 CA B:GLY399 4.8 17.4 1.0 OH B:TYR386 4.8 14.5 1.0 N B:ASP370 4.8 12.9 1.0 CA A:GLU330 4.8 17.0 1.0 N A:GLU330 4.9 18.2 1.0 N B:HIS368 4.9 17.3 1.0 O B:MSE367 5.0 20.6 1.0

W.C.Voegtli, A.Y.Madrona, D.K.Wilson. The Structure of AIP1P, A Wd Repeat Protein That Regulates Cofilin-Mediated Actin Depolymerization. J.Biol.Chem. V. 278 34373 2003.
ISSN: ISSN 0021-9258
PubMed: 12807914
DOI: 10.1074/JBC.M302773200