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Zinc in PDB 1pft: N-Terminal Domain of Tfiib, uc(Nmr)

Zinc Binding Sites:

The binding sites of Zinc atom in the N-Terminal Domain of Tfiib, uc(Nmr) (pdb code 1pft). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the N-Terminal Domain of Tfiib, uc(Nmr), PDB code: 1pft:

Zinc binding site 1 out of 1 in 1pft

Go back to Zinc Binding Sites List in 1pft
Zinc binding site 1 out of 1 in the N-Terminal Domain of Tfiib, uc(Nmr)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of N-Terminal Domain of Tfiib, uc(Nmr) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn51

b:0.0
occ:1.00
SG A:CYS11 2.3 0.0 1.0
SG A:CYS30 2.3 0.0 1.0
SG A:CYS8 2.3 0.0 1.0
SG A:CYS27 2.4 0.0 1.0
H A:CYS30 2.7 0.0 1.0
H A:CYS11 2.8 0.0 1.0
HB3 A:LYS29 3.1 0.0 1.0
HB2 A:SER13 3.1 0.0 1.0
HB3 A:CYS30 3.2 0.0 1.0
HB2 A:CYS27 3.2 0.0 1.0
HB3 A:CYS11 3.3 0.0 1.0
CB A:CYS27 3.4 0.0 1.0
CB A:CYS8 3.4 0.0 1.0
CB A:CYS30 3.4 0.0 1.0
CB A:CYS11 3.4 0.0 1.0
HB2 A:ALA10 3.4 0.0 1.0
HB2 A:CYS8 3.4 0.0 1.0
HB3 A:CYS8 3.4 0.0 1.0
N A:CYS30 3.6 0.0 1.0
HB3 A:CYS27 3.6 0.0 1.0
N A:CYS11 3.7 0.0 1.0
HB3 A:TYR32 3.9 0.0 1.0
CA A:CYS11 4.0 0.0 1.0
CA A:CYS30 4.1 0.0 1.0
CB A:LYS29 4.2 0.0 1.0
CB A:SER13 4.2 0.0 1.0
H A:TYR32 4.2 0.0 1.0
H A:SER13 4.3 0.0 1.0
HB2 A:CYS30 4.3 0.0 1.0
HB1 A:ALA10 4.3 0.0 1.0
CB A:ALA10 4.3 0.0 1.0
HB2 A:CYS11 4.3 0.0 1.0
H A:LYS29 4.4 0.0 1.0
HB2 A:LYS29 4.5 0.0 1.0
H A:GLU12 4.5 0.0 1.0
H A:ALA10 4.5 0.0 1.0
HG A:SER13 4.5 0.0 1.0
N A:SER13 4.6 0.0 1.0
OG A:SER13 4.6 0.0 1.0
C A:LYS29 4.7 0.0 1.0
HG2 A:LYS29 4.7 0.0 1.0
O A:SER13 4.7 0.0 1.0
CA A:CYS27 4.8 0.0 1.0
H A:GLY31 4.8 0.0 1.0
CA A:CYS8 4.8 0.0 1.0
HB3 A:SER13 4.8 0.0 1.0
C A:CYS11 4.8 0.0 1.0
C A:ALA10 4.8 0.0 1.0
CB A:TYR32 4.8 0.0 1.0
CA A:LYS29 4.8 0.0 1.0
HA A:CYS27 4.9 0.0 1.0
HB2 A:TYR32 4.9 0.0 1.0
HD2 A:TYR32 4.9 0.0 1.0
CA A:SER13 4.9 0.0 1.0
HA A:CYS30 4.9 0.0 1.0
N A:GLU12 5.0 0.0 1.0
N A:LYS29 5.0 0.0 1.0
C A:CYS30 5.0 0.0 1.0
HA A:CYS11 5.0 0.0 1.0
CA A:ALA10 5.0 0.0 1.0

Reference:

W.Zhu, Q.Zeng, C.M.Colangelo, M.Lewis, M.F.Summers, R.A.Scott. The N-Terminal Domain of Tfiib From Pyrococcus Furiosus Forms A Zinc Ribbon. Nat.Struct.Biol. V. 3 122 1996.
ISSN: ISSN 1072-8368
PubMed: 8564536
DOI: 10.1038/NSB0296-122
Page generated: Mon Jan 25 16:11:34 2021

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