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Zinc in PDB 1ovx: uc(Nmr) Structure of the E. Coli Clpx Chaperone Zinc Binding Domain Dimer

Zinc Binding Sites:

The binding sites of Zinc atom in the uc(Nmr) Structure of the E. Coli Clpx Chaperone Zinc Binding Domain Dimer (pdb code 1ovx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the uc(Nmr) Structure of the E. Coli Clpx Chaperone Zinc Binding Domain Dimer, PDB code: 1ovx:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1ovx

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Zinc binding site 1 out of 2 in the uc(Nmr) Structure of the E. Coli Clpx Chaperone Zinc Binding Domain Dimer


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Structure of the E. Coli Clpx Chaperone Zinc Binding Domain Dimer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn61

b:0.0
occ:1.00
H A:CYS36 2.1 0.0 1.0
SG A:CYS39 2.3 0.0 1.0
SG A:CYS36 2.3 0.0 1.0
SG A:CYS14 2.3 0.0 1.0
SG A:CYS17 2.3 0.0 1.0
HB3 A:CYS39 2.8 0.0 1.0
HB2 A:CYS17 3.0 0.0 1.0
N A:CYS36 3.0 0.0 1.0
HB2 A:CYS14 3.1 0.0 1.0
CB A:CYS39 3.1 0.0 1.0
CB A:CYS14 3.2 0.0 1.0
CB A:CYS17 3.2 0.0 1.0
CB A:CYS36 3.3 0.0 1.0
HB2 A:CYS36 3.3 0.0 1.0
H A:CYS39 3.3 0.0 1.0
HG13 A:ILE35 3.3 0.0 1.0
H A:CYS17 3.4 0.0 1.0
HB3 A:CYS14 3.4 0.0 1.0
HA A:ILE35 3.5 0.0 1.0
CA A:CYS36 3.6 0.0 1.0
HB2 A:CYS39 3.9 0.0 1.0
HB3 A:CYS17 3.9 0.0 1.0
N A:CYS39 4.0 0.0 1.0
C A:ILE35 4.0 0.0 1.0
HB2 A:PHE16 4.1 0.0 1.0
N A:CYS17 4.1 0.0 1.0
CA A:CYS39 4.1 0.0 1.0
C A:CYS36 4.2 0.0 1.0
CG1 A:ILE35 4.2 0.0 1.0
HG12 A:ILE35 4.2 0.0 1.0
HB3 A:CYS36 4.3 0.0 1.0
CA A:ILE35 4.3 0.0 1.0
O A:CYS36 4.3 0.0 1.0
CA A:CYS17 4.3 0.0 1.0
HB2 A:GLU38 4.5 0.0 1.0
HA A:CYS39 4.5 0.0 1.0
CA A:CYS14 4.6 0.0 1.0
HA A:CYS36 4.6 0.0 1.0
HG13 A:VAL24 4.6 0.0 1.0
HD2 A:PHE16 4.6 0.0 1.0
HA A:CYS14 4.7 0.0 1.0
HD23 A:LEU27 4.8 0.0 1.0
HG22 A:VAL24 4.8 0.0 1.0
H A:PHE16 4.9 0.0 1.0
CB A:ILE35 4.9 0.0 1.0
H A:GLU38 4.9 0.0 1.0
HA A:CYS17 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1ovx

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Zinc binding site 2 out of 2 in the uc(Nmr) Structure of the E. Coli Clpx Chaperone Zinc Binding Domain Dimer


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Structure of the E. Coli Clpx Chaperone Zinc Binding Domain Dimer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn61

b:0.0
occ:1.00
H B:CYS36 2.1 0.0 1.0
SG B:CYS39 2.3 0.0 1.0
SG B:CYS36 2.3 0.0 1.0
SG B:CYS14 2.3 0.0 1.0
SG B:CYS17 2.3 0.0 1.0
HB3 B:CYS39 2.8 0.0 1.0
HB2 B:CYS17 3.0 0.0 1.0
N B:CYS36 3.0 0.0 1.0
HB2 B:CYS14 3.1 0.0 1.0
CB B:CYS39 3.1 0.0 1.0
CB B:CYS14 3.2 0.0 1.0
CB B:CYS17 3.2 0.0 1.0
CB B:CYS36 3.3 0.0 1.0
HB2 B:CYS36 3.3 0.0 1.0
H B:CYS39 3.3 0.0 1.0
HG13 B:ILE35 3.3 0.0 1.0
H B:CYS17 3.4 0.0 1.0
HB3 B:CYS14 3.4 0.0 1.0
HA B:ILE35 3.6 0.0 1.0
CA B:CYS36 3.6 0.0 1.0
HB2 B:CYS39 3.9 0.0 1.0
HB3 B:CYS17 3.9 0.0 1.0
N B:CYS39 4.0 0.0 1.0
HB2 B:PHE16 4.0 0.0 1.0
C B:ILE35 4.0 0.0 1.0
N B:CYS17 4.1 0.0 1.0
CA B:CYS39 4.1 0.0 1.0
C B:CYS36 4.2 0.0 1.0
CG1 B:ILE35 4.2 0.0 1.0
HG12 B:ILE35 4.2 0.0 1.0
HB3 B:CYS36 4.3 0.0 1.0
CA B:ILE35 4.3 0.0 1.0
O B:CYS36 4.3 0.0 1.0
CA B:CYS17 4.3 0.0 1.0
HB2 B:GLU38 4.5 0.0 1.0
HA B:CYS39 4.5 0.0 1.0
CA B:CYS14 4.6 0.0 1.0
HD2 B:PHE16 4.6 0.0 1.0
HG13 B:VAL24 4.6 0.0 1.0
HA B:CYS36 4.6 0.0 1.0
HA B:CYS14 4.7 0.0 1.0
HD23 B:LEU27 4.8 0.0 1.0
HG22 B:VAL24 4.8 0.0 1.0
H B:PHE16 4.9 0.0 1.0
CB B:ILE35 4.9 0.0 1.0
H B:GLU38 5.0 0.0 1.0
HA B:CYS17 5.0 0.0 1.0

Reference:

L.W.Donaldson, U.Wojtyra, W.A.Houry. Solution Structure of the Dimeric Zinc Binding Domain of the Chaperone Clpx. J.Biol.Chem. V. 278 48991 2003.
ISSN: ISSN 0021-9258
PubMed: 14525985
DOI: 10.1074/JBC.M307826200
Page generated: Mon Jan 25 16:11:13 2021

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