Zinc in PDB 1oqj: Crystal Structure of the Sand Domain From Glucocorticoid Modulatory Element Binding Protein-1 (GMEB1)

The structure of Crystal Structure of the Sand Domain From Glucocorticoid Modulatory Element Binding Protein-1 (GMEB1), PDB code: 1oqj was solved by P.L.Surdo, M.J.Bottomley, M.Sattler, K.Scheffzek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.45 / 1.55
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.946, 49.077, 88.903, 90.00, 90.00, 90.00
R / Rfree (%)	19.4 / 21

The binding sites of Zinc atom in the Crystal Structure of the Sand Domain From Glucocorticoid Modulatory Element Binding Protein-1 (GMEB1) (pdb code 1oqj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Sand Domain From Glucocorticoid Modulatory Element Binding Protein-1 (GMEB1), PDB code: 1oqj:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Sand Domain From Glucocorticoid Modulatory Element Binding Protein-1 (GMEB1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Sand Domain From Glucocorticoid Modulatory Element Binding Protein-1 (GMEB1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn183 b:11.8 occ:1.00 NE2 A:HIS170 2.1 10.6 1.0 SG A:CYS113 2.3 9.1 1.0 SG A:CYS178 2.4 15.2 1.0 SG A:CYS174 2.4 13.2 1.0 CD2 A:HIS170 3.1 9.2 1.0 CE1 A:HIS170 3.1 9.5 1.0 CB A:CYS178 3.2 18.5 1.0 CB A:CYS113 3.4 8.2 1.0 CB A:CYS174 3.4 11.6 1.0 CA A:CYS174 3.8 12.2 1.0 N A:SER175 4.0 12.2 1.0 ND1 A:HIS170 4.2 10.4 1.0 CG A:HIS170 4.2 9.7 1.0 O A:HOH244 4.3 31.4 1.0 C A:CYS174 4.4 13.3 1.0 N A:ASN176 4.4 15.5 1.0 CD1 A:PHE167 4.5 8.1 1.0 CA A:CYS178 4.5 19.4 1.0 CE1 A:PHE167 4.5 8.1 1.0 N A:CYS178 4.6 17.0 1.0 CA A:CYS113 4.7 8.9 1.0 O A:VAL173 4.8 10.1 1.0 O A:HOH256 4.8 31.1 1.0 OG A:SER175 4.9 14.3 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Sand Domain From Glucocorticoid Modulatory Element Binding Protein-1 (GMEB1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Sand Domain From Glucocorticoid Modulatory Element Binding Protein-1 (GMEB1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn183 b:15.3 occ:1.00 NE2 B:HIS170 2.1 14.1 1.0 SG B:CYS174 2.3 15.5 1.0 SG B:CYS178 2.3 19.1 1.0 SG B:CYS113 2.3 13.2 1.0 CE1 B:HIS170 3.1 12.5 1.0 CD2 B:HIS170 3.1 13.7 1.0 CB B:CYS178 3.2 24.4 1.0 CB B:CYS174 3.4 13.3 1.0 CB B:CYS113 3.4 11.9 1.0 CA B:CYS174 3.7 14.3 1.0 N B:SER175 4.0 17.9 1.0 ND1 B:HIS170 4.2 13.6 1.0 CG B:HIS170 4.3 12.4 1.0 N B:ASN176 4.3 24.4 1.0 C B:CYS174 4.3 15.9 1.0 N B:CYS178 4.4 26.9 1.0 CA B:CYS178 4.4 26.1 1.0 CD1 B:PHE167 4.6 10.4 1.0 CE1 B:PHE167 4.7 11.0 1.0 CA B:CYS113 4.7 12.3 1.0 OG B:SER175 4.8 20.7 1.0 O B:VAL173 5.0 11.9 1.0 CA B:ASN176 5.0 26.5 1.0

P.L.Surdo, M.J.Bottomley, M.Sattler, K.Scheffzek. Crystal Structure and Nuclear Magnetic Resonance Analyses of the Sand Domain From Glucocorticoid Modulatory Element Binding Protein-1 Reveals Deoxyribonucleic Acid and Zinc Binding Regions Mol.Endocrinol. V. 17 1283 2003.
ISSN: ISSN 0888-8809
PubMed: 12702733
DOI: 10.1210/ME.2002-0409