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Zinc in PDB 1mea: Methionyl-Trna Synthetase Zinc Binding Domain. 3D Structure and Homology with Rubredoxin and Gag Retroviral Proteins

Enzymatic activity of Methionyl-Trna Synthetase Zinc Binding Domain. 3D Structure and Homology with Rubredoxin and Gag Retroviral Proteins

All present enzymatic activity of Methionyl-Trna Synthetase Zinc Binding Domain. 3D Structure and Homology with Rubredoxin and Gag Retroviral Proteins:
6.1.1.10;

Zinc Binding Sites:

The binding sites of Zinc atom in the Methionyl-Trna Synthetase Zinc Binding Domain. 3D Structure and Homology with Rubredoxin and Gag Retroviral Proteins (pdb code 1mea). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Methionyl-Trna Synthetase Zinc Binding Domain. 3D Structure and Homology with Rubredoxin and Gag Retroviral Proteins, PDB code: 1mea:

Zinc binding site 1 out of 1 in 1mea

Go back to Zinc Binding Sites List in 1mea
Zinc binding site 1 out of 1 in the Methionyl-Trna Synthetase Zinc Binding Domain. 3D Structure and Homology with Rubredoxin and Gag Retroviral Proteins


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Methionyl-Trna Synthetase Zinc Binding Domain. 3D Structure and Homology with Rubredoxin and Gag Retroviral Proteins within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn29

b:0.0
occ:1.00
SG A:CYS23 2.2 0.0 1.0
SG A:CYS10 2.3 0.0 1.0
SG A:CYS26 2.3 0.0 1.0
SG A:CYS13 2.3 0.0 1.0
H A:CYS26 3.0 0.0 1.0
HB3 A:CYS10 3.1 0.0 1.0
HB A:VAL25 3.2 0.0 1.0
CB A:CYS10 3.3 0.0 1.0
H A:GLY27 3.3 0.0 1.0
HB2 A:CYS10 3.6 0.0 1.0
CB A:CYS23 3.6 0.0 1.0
HB2 A:CYS23 3.6 0.0 1.0
CB A:CYS26 3.6 0.0 1.0
N A:CYS26 3.8 0.0 1.0
HB3 A:CYS26 3.8 0.0 1.0
CB A:CYS13 3.8 0.0 1.0
HB3 A:CYS13 3.9 0.0 1.0
H A:CYS13 4.0 0.0 1.0
HB3 A:CYS23 4.1 0.0 1.0
N A:GLY27 4.2 0.0 1.0
H A:VAL25 4.2 0.0 1.0
CA A:CYS26 4.2 0.0 1.0
CB A:VAL25 4.3 0.0 1.0
H A:ALA28 4.3 0.0 1.0
HZ A:PHE5 4.4 0.0 1.0
HB2 A:CYS26 4.5 0.0 1.0
HB2 A:CYS13 4.5 0.0 1.0
CA A:CYS10 4.7 0.0 1.0
N A:CYS13 4.7 0.0 1.0
HA A:ALA28 4.7 0.0 1.0
HA A:CYS23 4.7 0.0 1.0
C A:CYS26 4.7 0.0 1.0
O A:CYS10 4.7 0.0 1.0
CA A:CYS23 4.8 0.0 1.0
HG21 A:VAL25 4.8 0.0 1.0
C A:VAL25 4.8 0.0 1.0
N A:ALA28 4.8 0.0 1.0
CA A:CYS13 4.8 0.0 1.0
HB3 A:LYS12 4.9 0.0 1.0
HG23 A:VAL25 4.9 0.0 1.0
CA A:VAL25 4.9 0.0 1.0
N A:VAL25 4.9 0.0 1.0
CG2 A:VAL25 4.9 0.0 1.0

Reference:

D.Fourmy, F.Dardel, S.Blanquet. Methionyl-Trna Synthetase Zinc Binding Domain. Three-Dimensional Structure and Homology with Rubredoxin and Gag Retroviral Proteins. J.Mol.Biol. V. 231 1078 1993.
ISSN: ISSN 0022-2836
PubMed: 8515466
DOI: 10.1006/JMBI.1993.1353
Page generated: Wed Dec 16 02:57:02 2020

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