Zinc in PDB 1lrh: Crystal Structure of Auxin-Binding Protein 1 in Complex with 1- Naphthalene Acetic Acid

The structure of Crystal Structure of Auxin-Binding Protein 1 in Complex with 1- Naphthalene Acetic Acid, PDB code: 1lrh was solved by E.J.Woo, J.Marshall, J.Bauly, J.-G.Chen, M.Venis, R.M.Napier, R.W.Pickersgill, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	61.583, 82.433, 69.962, 90.00, 94.37, 90.00
R / Rfree (%)	20 / 24

The binding sites of Zinc atom in the Crystal Structure of Auxin-Binding Protein 1 in Complex with 1- Naphthalene Acetic Acid (pdb code 1lrh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of Auxin-Binding Protein 1 in Complex with 1- Naphthalene Acetic Acid, PDB code: 1lrh:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of Auxin-Binding Protein 1 in Complex with 1- Naphthalene Acetic Acid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Auxin-Binding Protein 1 in Complex with 1- Naphthalene Acetic Acid within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn180 b:13.4 occ:1.00 NE2 A:HIS106 2.2 7.0 1.0 NE2 A:HIS57 2.3 11.4 1.0 NE2 A:HIS59 2.3 12.1 1.0 O2 A:NLA5190 2.4 20.4 1.0 OE1 A:GLU63 2.4 13.9 1.0 O1 A:NLA5190 2.5 21.2 1.0 C12 A:NLA5190 2.8 22.1 1.0 CE1 A:HIS106 3.0 8.2 1.0 CD2 A:HIS57 3.1 10.5 1.0 CD A:GLU63 3.2 16.2 1.0 CD2 A:HIS106 3.2 10.1 1.0 CD2 A:HIS59 3.3 12.9 1.0 CE1 A:HIS57 3.3 13.6 1.0 OE2 A:GLU63 3.3 18.2 1.0 CE1 A:HIS59 3.3 12.9 1.0 ND1 A:HIS106 4.2 6.1 1.0 C11 A:NLA5190 4.2 23.8 1.0 CG A:HIS57 4.3 8.2 1.0 ND1 A:HIS57 4.3 10.4 1.0 CG A:HIS106 4.3 7.1 1.0 ND1 A:HIS59 4.4 13.4 1.0 CG A:HIS59 4.4 12.9 1.0 C3 A:NLA5190 4.5 26.5 1.0 CG A:GLU63 4.6 12.4 1.0 CZ A:PHE65 4.7 8.1 1.0 CE1 A:PHE65 4.9 9.7 1.0 C2 A:NLA5190 4.9 26.1 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of Auxin-Binding Protein 1 in Complex with 1- Naphthalene Acetic Acid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Auxin-Binding Protein 1 in Complex with 1- Naphthalene Acetic Acid within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn180 b:12.2 occ:1.00 NE2 B:HIS106 2.2 7.0 1.0 NE2 B:HIS59 2.2 11.0 1.0 NE2 B:HIS57 2.3 12.5 1.0 O2 B:NLA6190 2.4 24.4 1.0 O1 B:NLA6190 2.5 22.6 1.0 OE1 B:GLU63 2.5 13.2 1.0 C12 B:NLA6190 2.8 25.5 1.0 CE1 B:HIS106 3.0 7.8 1.0 CD2 B:HIS59 3.1 10.5 1.0 CE1 B:HIS57 3.2 12.0 1.0 CE1 B:HIS59 3.2 12.0 1.0 CD2 B:HIS57 3.2 11.9 1.0 CD2 B:HIS106 3.3 8.6 1.0 CD B:GLU63 3.3 16.6 1.0 OE2 B:GLU63 3.4 17.0 1.0 ND1 B:HIS106 4.2 6.5 1.0 C11 B:NLA6190 4.2 25.6 1.0 CG B:HIS59 4.3 10.3 1.0 ND1 B:HIS59 4.3 8.3 1.0 ND1 B:HIS57 4.3 10.9 1.0 CG B:HIS106 4.3 7.6 1.0 CG B:HIS57 4.3 12.5 1.0 C3 B:NLA6190 4.3 27.8 1.0 CG B:GLU63 4.8 12.1 1.0 C2 B:NLA6190 4.8 26.5 1.0 CZ B:PHE65 4.8 11.2 1.0 CE1 B:PHE65 5.0 10.7 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of Auxin-Binding Protein 1 in Complex with 1- Naphthalene Acetic Acid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Auxin-Binding Protein 1 in Complex with 1- Naphthalene Acetic Acid within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn180 b:14.6 occ:1.00 NE2 C:HIS59 2.2 9.6 1.0 NE2 C:HIS106 2.3 10.2 1.0 OE1 C:GLU63 2.3 12.2 1.0 O1 C:NLA7190 2.3 19.4 1.0 NE2 C:HIS57 2.4 14.5 1.0 O2 C:NLA7190 2.5 21.7 1.0 C12 C:NLA7190 2.7 21.6 1.0 CE1 C:HIS106 3.0 12.4 1.0 CE1 C:HIS59 3.0 12.3 1.0 CD C:GLU63 3.2 13.5 1.0 CD2 C:HIS59 3.2 11.5 1.0 CD2 C:HIS57 3.3 13.7 1.0 CE1 C:HIS57 3.3 14.4 1.0 CD2 C:HIS106 3.4 11.4 1.0 OE2 C:GLU63 3.4 15.1 1.0 C11 C:NLA7190 4.2 20.6 1.0 ND1 C:HIS106 4.2 11.7 1.0 ND1 C:HIS59 4.2 10.2 1.0 CG C:HIS59 4.3 10.8 1.0 CG C:HIS106 4.4 12.8 1.0 C3 C:NLA7190 4.4 18.5 1.0 ND1 C:HIS57 4.4 13.6 1.0 CG C:HIS57 4.5 14.1 1.0 CG C:GLU63 4.6 10.4 1.0 CZ C:PHE65 4.7 10.6 1.0 C2 C:NLA7190 4.8 21.7 1.0 CE1 C:PHE65 4.9 10.2 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of Auxin-Binding Protein 1 in Complex with 1- Naphthalene Acetic Acid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Auxin-Binding Protein 1 in Complex with 1- Naphthalene Acetic Acid within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn180 b:11.8 occ:1.00 NE2 D:HIS57 2.2 9.6 1.0 NE2 D:HIS106 2.2 8.7 1.0 O2 D:NLA8190 2.3 15.4 1.0 NE2 D:HIS59 2.4 11.1 1.0 OE1 D:GLU63 2.4 13.5 1.0 O1 D:NLA8190 2.4 15.4 1.0 C12 D:NLA8190 2.6 15.8 1.0 CE1 D:HIS106 3.0 10.1 1.0 CE1 D:HIS57 3.0 12.6 1.0 CD2 D:HIS59 3.2 10.9 1.0 CD2 D:HIS106 3.3 9.3 1.0 CD2 D:HIS57 3.3 9.3 1.0 CE1 D:HIS59 3.3 10.6 1.0 CD D:GLU63 3.4 14.2 1.0 OE2 D:GLU63 3.6 16.1 1.0 C11 D:NLA8190 4.1 15.9 1.0 ND1 D:HIS57 4.2 10.2 1.0 ND1 D:HIS106 4.2 9.0 1.0 C3 D:NLA8190 4.3 17.5 1.0 CG D:HIS57 4.3 9.7 1.0 CG D:HIS106 4.3 8.3 1.0 CG D:HIS59 4.3 8.7 1.0 ND1 D:HIS59 4.4 8.6 1.0 CZ D:PHE65 4.6 9.0 1.0 C2 D:NLA8190 4.7 17.4 1.0 CG D:GLU63 4.7 8.2 1.0 CE1 D:PHE65 4.9 10.3 1.0

E.J.Woo, J.Marshall, J.Bauly, J.G.Chen, M.Venis, R.M.Napier, R.W.Pickersgill. Crystal Structure of Auxin-Binding Protein 1 in Complex with Auxin. Embo J. V. 21 2877 2002.
ISSN: ISSN 0261-4189
PubMed: 12065401
DOI: 10.1093/EMBOJ/CDF291