Zinc in PDB 1lr5: Crystal Structure of Auxin Binding Protein

The structure of Crystal Structure of Auxin Binding Protein, PDB code: 1lr5 was solved by E.J.Woo, J.Marshall, J.Bauley, J.-G.Chen, M.Venis, R.M.Napier, R.W.Pickersgill, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	61.583, 82.433, 69.962, 90.00, 94.37, 90.00
R / Rfree (%)	18.4 / 24.1

The binding sites of Zinc atom in the Crystal Structure of Auxin Binding Protein (pdb code 1lr5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of Auxin Binding Protein, PDB code: 1lr5:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of Auxin Binding Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Auxin Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn180 b:19.3 occ:1.00 O A:HOH282 2.2 20.2 1.0 NE2 A:HIS106 2.2 6.7 1.0 NE2 A:HIS59 2.3 9.6 1.0 NE2 A:HIS57 2.3 9.9 1.0 OE1 A:GLU63 2.3 15.3 1.0 CE1 A:HIS106 2.9 7.8 1.0 CD A:GLU63 3.0 15.8 1.0 OE2 A:GLU63 3.1 18.2 1.0 CD2 A:HIS57 3.2 9.4 1.0 CE1 A:HIS59 3.2 11.1 1.0 CD2 A:HIS59 3.3 10.2 1.0 CE1 A:HIS57 3.3 12.0 1.0 CD2 A:HIS106 3.4 7.8 1.0 ND1 A:HIS106 4.2 6.3 1.0 O A:HOH337 4.3 36.9 1.0 CG A:HIS57 4.3 7.7 1.0 ND1 A:HIS59 4.3 8.6 1.0 ND1 A:HIS57 4.3 8.6 1.0 CG A:HIS106 4.4 6.1 1.0 CG A:HIS59 4.4 8.3 1.0 CG A:GLU63 4.4 12.1 1.0 CZ A:PHE65 4.7 9.2 1.0 CE1 A:PHE65 4.8 8.7 1.0 CB A:GLU63 4.9 9.0 1.0 O A:HOH222 4.9 22.6 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of Auxin Binding Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Auxin Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn180 b:19.2 occ:1.00 NE2 B:HIS57 2.2 9.6 1.0 NE2 B:HIS106 2.3 7.8 1.0 OE1 B:GLU63 2.3 12.1 1.0 O B:HOH317 2.3 26.2 1.0 NE2 B:HIS59 2.3 10.5 1.0 O B:HOH376 2.7 29.9 1.0 CE1 B:HIS106 3.0 7.5 1.0 CD B:GLU63 3.1 14.1 1.0 CD2 B:HIS57 3.2 10.2 1.0 CE1 B:HIS57 3.2 11.6 1.0 CD2 B:HIS59 3.2 11.3 1.0 OE2 B:GLU63 3.2 17.4 1.0 CE1 B:HIS59 3.3 11.2 1.0 CD2 B:HIS106 3.3 7.7 1.0 ND1 B:HIS106 4.2 5.0 1.0 CG B:HIS57 4.3 10.2 1.0 ND1 B:HIS57 4.3 10.4 1.0 CG B:HIS59 4.3 10.0 1.0 ND1 B:HIS59 4.3 8.9 1.0 CG B:HIS106 4.4 6.4 1.0 CG B:GLU63 4.5 10.8 1.0 CZ B:PHE65 4.7 10.5 1.0 CE1 B:PHE65 4.8 10.3 1.0 CB B:GLU63 5.0 8.0 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of Auxin Binding Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Auxin Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn180 b:20.8 occ:1.00 OE1 C:GLU63 2.2 12.5 1.0 NE2 C:HIS59 2.3 8.4 1.0 NE2 C:HIS106 2.3 11.4 1.0 NE2 C:HIS57 2.3 11.7 1.0 CE1 C:HIS106 3.0 12.0 1.0 CD C:GLU63 3.1 14.4 1.0 CE1 C:HIS59 3.1 9.2 1.0 CD2 C:HIS57 3.2 10.5 1.0 OE2 C:GLU63 3.2 17.1 1.0 CD2 C:HIS59 3.3 10.4 1.0 CE1 C:HIS57 3.3 13.7 1.0 CD2 C:HIS106 3.4 12.2 1.0 ND1 C:HIS106 4.2 11.4 1.0 ND1 C:HIS59 4.3 8.5 1.0 CG C:HIS57 4.3 13.0 1.0 ND1 C:HIS57 4.4 12.9 1.0 CG C:HIS59 4.4 10.1 1.0 CG C:HIS106 4.4 10.6 1.0 O C:HOH487 4.4 27.7 1.0 CG C:GLU63 4.5 11.8 1.0 CZ C:PHE65 4.6 12.7 1.0 CE1 C:PHE65 4.7 11.2 1.0 CB C:GLU63 4.9 10.8 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of Auxin Binding Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Auxin Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn180 b:17.7 occ:1.00 NE2 D:HIS106 2.2 7.6 1.0 O D:HOH254 2.2 19.1 1.0 NE2 D:HIS57 2.3 13.2 1.0 OE1 D:GLU63 2.4 12.6 1.0 NE2 D:HIS59 2.4 9.8 1.0 CE1 D:HIS106 3.1 9.5 1.0 CD2 D:HIS57 3.1 10.8 1.0 CD2 D:HIS59 3.2 8.6 1.0 CD2 D:HIS106 3.2 9.8 1.0 CD D:GLU63 3.3 15.1 1.0 CE1 D:HIS57 3.3 13.2 1.0 CE1 D:HIS59 3.4 9.6 1.0 OE2 D:GLU63 3.5 15.9 1.0 ND1 D:HIS106 4.2 9.6 1.0 CG D:HIS57 4.3 11.1 1.0 CG D:HIS106 4.3 8.0 1.0 ND1 D:HIS57 4.3 10.5 1.0 CG D:HIS59 4.4 8.3 1.0 ND1 D:HIS59 4.4 5.3 1.0 CZ D:PHE65 4.5 8.0 1.0 CG D:GLU63 4.6 10.4 1.0 CE1 D:PHE65 4.8 6.8 1.0 CG1 D:ILE100 5.0 7.1 1.0 CB D:GLU63 5.0 10.1 1.0

E.J.Woo, J.Marshall, J.Bauly, J.G.Chen, M.Venis, R.M.Napier, R.W.Pickersgill. Crystal Structure of Auxin-Binding Protein 1 in Complex with Auxin. Embo J. V. 21 2877 2002.
ISSN: ISSN 0261-4189
PubMed: 12065401
DOI: 10.1093/EMBOJ/CDF291