Atomistry » Zinc » PDB 1jao-1joe » 1jmu
Atomistry »
  Zinc »
    PDB 1jao-1joe »
      1jmu »

Zinc in PDB 1jmu: Crystal Structure of the Reovirus MU1/SIGMA3 Complex

Protein crystallography data

The structure of Crystal Structure of the Reovirus MU1/SIGMA3 Complex, PDB code: 1jmu was solved by S.Liemann, M.L.Nibert, S.C.Harrison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.80
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 180.294, 184.942, 284.324, 90.00, 90.00, 90.00
R / Rfree (%) 21.6 / 24.1

Other elements in 1jmu:

The structure of Crystal Structure of the Reovirus MU1/SIGMA3 Complex also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Reovirus MU1/SIGMA3 Complex (pdb code 1jmu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of the Reovirus MU1/SIGMA3 Complex, PDB code: 1jmu:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 1jmu

Go back to Zinc Binding Sites List in 1jmu
Zinc binding site 1 out of 3 in the Crystal Structure of the Reovirus MU1/SIGMA3 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Reovirus MU1/SIGMA3 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn702

b:39.7
occ:1.00
NE2 G:HIS71 1.9 42.5 1.0
SG G:CYS54 2.3 45.3 1.0
SG G:CYS73 2.3 42.4 1.0
SG G:CYS51 2.3 41.8 1.0
CE1 G:HIS71 2.8 43.5 1.0
CB G:CYS73 3.0 45.4 1.0
CD2 G:HIS71 3.1 42.5 1.0
CB G:CYS51 3.2 41.4 1.0
CB G:CYS54 3.4 44.9 1.0
N G:CYS54 3.7 43.9 1.0
CA G:CYS73 3.8 47.3 1.0
ND1 G:HIS71 3.9 44.2 1.0
CB G:HIS53 4.1 46.5 1.0
CA G:CYS54 4.1 43.4 1.0
CG G:HIS71 4.1 43.7 1.0
C G:HIS53 4.2 45.1 1.0
CA G:HIS53 4.5 44.6 1.0
N G:HIS53 4.6 44.2 1.0
CA G:CYS51 4.6 41.5 1.0
C G:CYS73 4.7 47.8 1.0
N G:CYS73 4.8 47.6 1.0
C G:CYS51 4.8 41.8 1.0
O G:CYS51 4.9 42.3 1.0
O G:HIS53 4.9 45.6 1.0
C G:CYS54 4.9 42.8 1.0
N G:ASN74 5.0 48.1 1.0
N G:LEU55 5.0 42.2 1.0

Zinc binding site 2 out of 3 in 1jmu

Go back to Zinc Binding Sites List in 1jmu
Zinc binding site 2 out of 3 in the Crystal Structure of the Reovirus MU1/SIGMA3 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Reovirus MU1/SIGMA3 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn703

b:45.6
occ:1.00
NE2 H:HIS71 1.9 40.2 1.0
SG H:CYS51 2.2 40.4 1.0
SG H:CYS54 2.3 42.8 1.0
SG H:CYS73 2.3 46.3 1.0
CE1 H:HIS71 2.7 40.1 1.0
CB H:CYS51 3.1 41.9 1.0
CD2 H:HIS71 3.1 42.1 1.0
CB H:CYS73 3.1 47.4 1.0
CB H:CYS54 3.4 43.6 1.0
N H:CYS54 3.7 45.4 1.0
CA H:CYS73 3.9 48.0 1.0
ND1 H:HIS71 3.9 40.7 1.0
CB H:HIS53 4.1 48.8 1.0
CG H:HIS71 4.1 41.7 1.0
CA H:CYS54 4.1 45.0 1.0
C H:HIS53 4.2 45.7 1.0
CA H:CYS51 4.5 43.0 1.0
CA H:HIS53 4.5 45.9 1.0
N H:HIS53 4.5 46.3 1.0
C H:CYS51 4.8 43.8 1.0
C H:CYS73 4.8 48.3 1.0
O H:CYS51 4.9 43.7 1.0
C H:CYS54 4.9 45.0 1.0
N H:CYS73 4.9 47.7 1.0
O H:HIS53 4.9 45.4 1.0
N H:LEU55 5.0 44.9 1.0
O H:HOH722 5.0 47.6 1.0

Zinc binding site 3 out of 3 in 1jmu

Go back to Zinc Binding Sites List in 1jmu
Zinc binding site 3 out of 3 in the Crystal Structure of the Reovirus MU1/SIGMA3 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the Reovirus MU1/SIGMA3 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn701

b:52.6
occ:1.00
NE2 I:HIS71 2.0 43.7 1.0
SG I:CYS51 2.3 43.6 1.0
SG I:CYS54 2.3 43.0 1.0
SG I:CYS73 2.3 47.7 1.0
CE1 I:HIS71 2.8 41.9 1.0
CB I:CYS73 3.1 48.4 1.0
CB I:CYS51 3.1 42.4 1.0
CD2 I:HIS71 3.2 44.1 1.0
CB I:CYS54 3.4 44.5 1.0
N I:CYS54 3.6 45.6 1.0
CA I:CYS73 3.9 49.5 1.0
CB I:HIS53 4.0 48.4 1.0
ND1 I:HIS71 4.0 43.2 1.0
CA I:CYS54 4.1 44.7 1.0
C I:HIS53 4.1 45.9 1.0
CG I:HIS71 4.2 43.8 1.0
CA I:HIS53 4.4 46.6 1.0
N I:HIS53 4.5 46.4 1.0
CA I:CYS51 4.5 42.5 1.0
C I:CYS51 4.8 43.6 1.0
C I:CYS73 4.8 50.0 1.0
O I:CYS51 4.8 45.2 1.0
O I:HIS53 4.9 46.0 1.0
C I:CYS54 4.9 44.6 1.0
N I:CYS73 4.9 49.4 1.0
N I:LEU55 4.9 44.0 1.0

Reference:

S.Liemann, K.Chandran, T.S.Baker, M.L.Nibert, S.C.Harrison. Structure of the Reovirus Membrane-Penetration Protein, MU1, in A Complex with Is Protector Protein, SIGMA3. Cell(Cambridge,Mass.) V. 108 283 2002.
ISSN: ISSN 0092-8674
PubMed: 11832217
DOI: 10.1016/S0092-8674(02)00612-8
Page generated: Wed Dec 16 02:54:02 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy