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Zinc in PDB 1jf1: Crystal Structure of Hla-A2*0201 in Complex with A Decameric Altered Peptide Ligand From the Mart-1/Melan-A

Protein crystallography data

The structure of Crystal Structure of Hla-A2*0201 in Complex with A Decameric Altered Peptide Ligand From the Mart-1/Melan-A, PDB code: 1jf1 was solved by P.Sliz, O.Michielin, J.C.Cerottini, I.Luescher, P.Romero, M.Karplus, D.C.Wiley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.020, 75.250, 121.640, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 22.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Hla-A2*0201 in Complex with A Decameric Altered Peptide Ligand From the Mart-1/Melan-A (pdb code 1jf1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Hla-A2*0201 in Complex with A Decameric Altered Peptide Ligand From the Mart-1/Melan-A, PDB code: 1jf1:

Zinc binding site 1 out of 1 in 1jf1

Go back to Zinc Binding Sites List in 1jf1
Zinc binding site 1 out of 1 in the Crystal Structure of Hla-A2*0201 in Complex with A Decameric Altered Peptide Ligand From the Mart-1/Melan-A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Hla-A2*0201 in Complex with A Decameric Altered Peptide Ligand From the Mart-1/Melan-A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn9001

b:21.8
occ:1.00
NE2 A:HIS192 2.0 24.1 1.0
OD2 B:ASP98 2.1 21.5 1.0
CG B:ASP98 2.9 28.1 1.0
CE1 A:HIS192 3.0 22.8 1.0
CD2 A:HIS192 3.0 23.5 1.0
OD1 B:ASP98 3.2 26.3 1.0
O B:HOH188 4.0 45.4 1.0
ND1 A:HIS192 4.1 22.2 1.0
CG A:HIS192 4.1 20.9 1.0
O B:ASP98 4.2 30.6 1.0
CB B:ASP98 4.2 22.0 1.0
C B:ASP98 4.4 25.8 1.0
CA B:ASP98 4.5 22.9 1.0
O A:HOH9015 4.5 22.6 1.0

Reference:

P.Sliz, O.Michielin, J.C.Cerottini, I.Luescher, P.Romero, M.Karplus, D.C.Wiley. Crystal Structures of Two Closely Related But Antigenically Distinct Hla-A2/Melanocyte-Melanoma Tumor-Antigen Peptide Complexes. J.Immunol. V. 167 3276 2001.
ISSN: ISSN 0022-1767
PubMed: 11544315
Page generated: Wed Dec 16 02:53:50 2020

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