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Zinc in PDB 1jcv: Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure

Enzymatic activity of Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure

All present enzymatic activity of Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure:
1.15.1.1;

Protein crystallography data

The structure of Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure, PDB code: 1jcv was solved by N.L.Ogihara, H.E.Parge, P.J.Hart, M.S.Weiss, J.S.Valentine, D.S.Eisenberg, J.A.Tainer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.55
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 118.390, 118.390, 73.500, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Other elements in 1jcv:

The structure of Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure also contains other interesting chemical elements:

Copper (Cu) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure (pdb code 1jcv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure, PDB code: 1jcv:

Zinc binding site 1 out of 1 in 1jcv

Go back to Zinc Binding Sites List in 1jcv
Zinc binding site 1 out of 1 in the Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Reduced Bridge-Broken Yeast Cu/Zn Superoxide Dismutase Low Temperature (-180C) Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn155

b:16.4
occ:1.00
OD1 A:ASP83 1.9 12.3 1.0
ND1 A:HIS63 2.0 12.6 1.0
ND1 A:HIS71 2.1 11.2 1.0
ND1 A:HIS80 2.2 13.5 1.0
CG A:ASP83 2.8 10.2 1.0
OD2 A:ASP83 2.9 9.4 1.0
CE1 A:HIS71 3.0 12.0 1.0
CE1 A:HIS63 3.0 11.2 1.0
CE1 A:HIS80 3.1 12.5 1.0
CG A:HIS63 3.1 11.5 1.0
CG A:HIS71 3.2 10.8 1.0
CG A:HIS80 3.2 13.1 1.0
CB A:HIS63 3.4 10.6 1.0
CB A:HIS71 3.6 11.2 1.0
CB A:HIS80 3.6 11.7 1.0
CA A:HIS71 3.9 11.4 1.0
O A:LYS136 4.0 12.8 1.0
NE2 A:HIS63 4.1 11.9 1.0
NE2 A:HIS71 4.1 12.3 1.0
NE2 A:HIS80 4.2 12.8 1.0
CD2 A:HIS63 4.2 11.2 1.0
CB A:ASP83 4.2 9.7 1.0
CD2 A:HIS80 4.2 12.2 1.0
CD2 A:HIS71 4.3 11.5 1.0
CA A:ASP83 4.7 11.0 1.0
CD2 A:HIS46 4.8 12.2 1.0
N A:GLY72 4.8 11.1 1.0
CA A:HIS80 4.8 11.5 1.0
N A:HIS80 4.8 12.7 1.0
O A:HOH234 4.9 13.5 1.0
C A:HIS71 4.9 11.1 1.0
N A:ASP83 4.9 10.9 1.0
CA A:HIS63 4.9 10.9 1.0
N A:HIS71 4.9 11.6 1.0
C A:LYS136 4.9 11.9 1.0

Reference:

N.L.Ogihara, H.E.Parge, P.J.Hart, M.S.Weiss, J.J.Goto, B.R.Crane, J.Tsang, K.Slater, J.A.Roe, J.S.Valentine, D.Eisenberg, J.A.Tainer. Unusual Trigonal-Planar Copper Configuration Revealed in the Atomic Structure of Yeast Copper-Zinc Superoxide Dismutase. Biochemistry V. 35 2316 1996.
ISSN: ISSN 0006-2960
PubMed: 8652572
DOI: 10.1021/BI951930B
Page generated: Wed Dec 16 02:53:46 2020

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