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Zinc in PDB 1j6v: Crystal Structure of D. Radiodurans Luxs, C2

Protein crystallography data

The structure of Crystal Structure of D. Radiodurans Luxs, C2, PDB code: 1j6v was solved by H.A.Lewis, E.B.Furlong, M.G.Bergseid, W.E.Sanderson, S.G.Buchanan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 51.190, 70.140, 49.730, 90.00, 112.03, 90.00
R / Rfree (%) 19.6 / 24.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of D. Radiodurans Luxs, C2 (pdb code 1j6v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of D. Radiodurans Luxs, C2, PDB code: 1j6v:

Zinc binding site 1 out of 1 in 1j6v

Go back to Zinc Binding Sites List in 1j6v
Zinc binding site 1 out of 1 in the Crystal Structure of D. Radiodurans Luxs, C2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of D. Radiodurans Luxs, C2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn167

b:21.4
occ:1.00
NE2 A:HIS61 2.2 14.2 1.0
NE2 A:HIS57 2.2 11.3 1.0
SG A:CYS125 2.3 16.3 1.0
O A:HOH168 2.4 8.4 1.0
CE1 A:HIS61 3.1 13.1 1.0
CE1 A:HIS57 3.1 9.0 1.0
CD2 A:HIS61 3.2 17.8 1.0
CD2 A:HIS57 3.3 7.7 1.0
CB A:CYS125 3.5 13.0 1.0
NE2 A:HIS131 4.0 15.1 1.0
CA A:CYS125 4.0 14.8 1.0
ND1 A:HIS61 4.2 17.1 1.0
ND1 A:HIS57 4.2 12.7 1.0
N A:GLY126 4.2 14.8 1.0
CE1 A:HIS131 4.3 15.6 1.0
CG A:HIS61 4.3 15.4 1.0
CG A:HIS57 4.3 7.4 1.0
OE1 A:GLU60 4.4 31.4 1.0
C A:CYS125 4.5 17.6 1.0
N A:ASN127 4.8 12.1 1.0

Reference:

H.A.Lewis, E.B.Furlong, B.Laubert, G.A.Eroshkina, Y.Batiyenko, J.M.Adams, M.G.Bergseid, C.D.Marsh, T.S.Peat, W.E.Sanderson, J.M.Sauder, S.G.Buchanan. A Structural Genomics Approach to the Study of Quorum Sensing: Crystal Structures of Three Luxs Orthologs. Structure V. 9 527 2001.
ISSN: ISSN 0969-2126
PubMed: 11435117
DOI: 10.1016/S0969-2126(01)00613-X
Page generated: Sun Oct 13 03:22:16 2024

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