Zinc in PDB 1j5e: Structure of the Thermus Thermophilus 30S Ribosomal Subunit

The structure of Structure of the Thermus Thermophilus 30S Ribosomal Subunit, PDB code: 1j5e was solved by B.T.Wimberly, D.E.Brodersen, W.M.Clemons Jr., R.Morgan-Warren, A.P.Carter, C.Vonrhein, T.Hartsch, V.Ramakrishnan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	59.76 / 3.05
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	401.375, 401.375, 175.887, 90.00, 90.00, 90.00
R / Rfree (%)	20.8 / 25.2

The binding sites of Zinc atom in the Structure of the Thermus Thermophilus 30S Ribosomal Subunit (pdb code 1j5e). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Thermus Thermophilus 30S Ribosomal Subunit, PDB code: 1j5e:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of the Thermus Thermophilus 30S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Thermus Thermophilus 30S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn306 b:67.1 occ:1.89 SG D:CYS31 2.3 43.1 1.0 SG D:CYS9 2.6 48.4 1.0 SG D:CYS26 2.7 48.7 1.0 SG D:CYS12 2.9 54.2 1.0 O D:CYS31 3.2 98.9 1.0 CB D:CYS31 3.5 43.1 1.0 CA D:CYS31 3.6 98.9 1.0 O D:LEU19 3.7 0.4 1.0 C D:CYS31 3.8 98.9 1.0 CB D:CYS9 3.9 48.4 1.0 CB D:CYS12 4.2 54.2 1.0 CA D:CYS9 4.2 0.9 1.0 CB D:CYS26 4.2 48.7 1.0 CA D:CYS26 4.6 82.9 1.0 C D:LEU19 4.9 0.4 1.0 N D:CYS31 5.0 98.9 1.0

Zinc binding site 2 out of 2 in the Structure of the Thermus Thermophilus 30S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Thermus Thermophilus 30S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ N:Zn307 b:67.1 occ:1.10 SG N:CYS27 2.0 42.9 1.0 SG N:CYS43 2.2 55.7 1.0 SG N:CYS24 2.4 84.0 1.0 SG N:CYS40 2.4 66.0 1.0 CB N:CYS27 3.2 42.9 1.0 CB N:CYS43 3.3 55.7 1.0 CB N:CYS24 3.5 84.0 1.0 CB N:CYS40 3.5 66.0 1.0 N N:CYS27 3.8 60.6 1.0 N N:CYS40 3.9 71.9 1.0 CB N:ARG29 4.0 79.2 1.0 CA N:CYS27 4.1 60.6 1.0 N N:CYS43 4.2 37.7 1.0 CA N:CYS40 4.3 71.9 1.0 CA N:CYS43 4.4 37.7 1.0 CB N:ARG26 4.6 54.7 1.0 C N:ARG26 4.6 71.4 1.0 N N:ARG29 4.7 0.5 1.0 N2 A:G1202 4.7 68.2 1.0 O N:CYS40 4.7 71.9 1.0 C N:CYS27 4.7 60.6 1.0 N N:GLY28 4.8 74.5 1.0 CD2 N:LEU39 4.8 55.2 1.0 C N:CYS40 4.9 71.9 1.0 CA N:CYS24 4.9 95.0 1.0 CG N:ARG26 4.9 54.7 1.0 CA N:ARG26 5.0 71.4 1.0

B.T.Wimberly, D.E.Brodersen, W.M.Clemons Jr., R.J.Morgan-Warren, A.P.Carter, C.Vonrhein, T.Hartsch, V.Ramakrishnan. Structure of the 30S Ribosomal Subunit. Nature V. 407 327 2000.
ISSN: ISSN 0028-0836
PubMed: 11014182
DOI: 10.1038/35030006