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Zinc in PDB 1ia9: Crystal Structure of the Atypical Protein Kinase Domain of A Trp Ca-Channel, Chak (Amppnp Complex)

Enzymatic activity of Crystal Structure of the Atypical Protein Kinase Domain of A Trp Ca-Channel, Chak (Amppnp Complex)

All present enzymatic activity of Crystal Structure of the Atypical Protein Kinase Domain of A Trp Ca-Channel, Chak (Amppnp Complex):
2.7.1.37;

Protein crystallography data

The structure of Crystal Structure of the Atypical Protein Kinase Domain of A Trp Ca-Channel, Chak (Amppnp Complex), PDB code: 1ia9 was solved by H.Yamaguchi, M.Matsushita, A.C.Nairn, J.Kuriyan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 109.270, 136.550, 113.260, 90.00, 90.00, 90.00
R / Rfree (%) 24 / 29.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Atypical Protein Kinase Domain of A Trp Ca-Channel, Chak (Amppnp Complex) (pdb code 1ia9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Atypical Protein Kinase Domain of A Trp Ca-Channel, Chak (Amppnp Complex), PDB code: 1ia9:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1ia9

Go back to Zinc Binding Sites List in 1ia9
Zinc binding site 1 out of 2 in the Crystal Structure of the Atypical Protein Kinase Domain of A Trp Ca-Channel, Chak (Amppnp Complex)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Atypical Protein Kinase Domain of A Trp Ca-Channel, Chak (Amppnp Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2001

b:37.4
occ:1.00
NE2 A:HIS1808 2.0 31.1 1.0
ND1 A:HIS1751 2.2 40.8 1.0
SG A:CYS1814 2.3 42.6 1.0
SG A:CYS1810 2.4 40.5 1.0
CE1 A:HIS1808 3.0 32.0 1.0
CD2 A:HIS1808 3.1 34.7 1.0
CE1 A:HIS1751 3.1 37.1 1.0
CB A:CYS1814 3.1 45.8 1.0
CB A:CYS1810 3.2 42.9 1.0
CA A:CYS1810 3.2 44.9 1.0
CG A:HIS1751 3.2 38.9 1.0
CB A:HIS1751 3.6 31.8 1.0
N A:CYS1810 3.9 43.7 1.0
ND1 A:HIS1808 4.2 31.6 1.0
CG A:HIS1808 4.2 33.9 1.0
NE2 A:HIS1751 4.2 40.5 1.0
CD2 A:HIS1751 4.3 39.1 1.0
C A:CYS1810 4.5 47.7 1.0
CA A:CYS1814 4.5 44.4 1.0
CD1 A:LEU1819 4.6 37.8 1.0
N A:ASN1811 4.6 45.9 1.0
C A:HIS1809 4.6 46.0 1.0
O A:HIS1809 4.7 41.3 1.0

Zinc binding site 2 out of 2 in 1ia9

Go back to Zinc Binding Sites List in 1ia9
Zinc binding site 2 out of 2 in the Crystal Structure of the Atypical Protein Kinase Domain of A Trp Ca-Channel, Chak (Amppnp Complex)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Atypical Protein Kinase Domain of A Trp Ca-Channel, Chak (Amppnp Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn2001

b:40.0
occ:1.00
NE2 B:HIS1808 2.1 33.6 1.0
ND1 B:HIS1751 2.1 42.6 1.0
SG B:CYS1814 2.4 48.6 1.0
SG B:CYS1810 2.4 40.3 1.0
CE1 B:HIS1751 3.0 43.2 1.0
CE1 B:HIS1808 3.1 33.9 1.0
CD2 B:HIS1808 3.1 32.8 1.0
CG B:HIS1751 3.1 43.8 1.0
CB B:CYS1810 3.3 43.7 1.0
CB B:CYS1814 3.3 47.7 1.0
CA B:CYS1810 3.3 46.0 1.0
CB B:HIS1751 3.6 37.5 1.0
N B:CYS1810 4.0 45.5 1.0
NE2 B:HIS1751 4.1 44.6 1.0
CD2 B:HIS1751 4.2 44.9 1.0
ND1 B:HIS1808 4.2 30.8 1.0
CG B:HIS1808 4.3 35.8 1.0
C B:CYS1810 4.6 49.6 1.0
CA B:CYS1814 4.6 48.8 1.0
C B:HIS1809 4.6 48.0 1.0
N B:ASN1811 4.6 49.5 1.0
O B:HOH3066 4.6 39.4 1.0
O B:HIS1809 4.7 50.1 1.0
CD1 B:LEU1819 4.8 47.0 1.0

Reference:

H.Yamaguchi, M.Matsushita, A.C.Nairn, J.Kuriyan. Crystal Structure of the Atypical Protein Kinase Domain of A Trp Channel with Phosphotransferase Activity. Mol.Cell V. 7 1047 2001.
ISSN: ISSN 1097-2765
PubMed: 11389851
DOI: 10.1016/S1097-2765(01)00256-8
Page generated: Wed Dec 16 02:52:35 2020

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