Zinc in PDB 1hyi: Solution Structure of the EEA1 Fyve Domain Complexed with Inositol 1,3-Bisphosphate

The binding sites of Zinc atom in the Solution Structure of the EEA1 Fyve Domain Complexed with Inositol 1,3-Bisphosphate (pdb code 1hyi). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the EEA1 Fyve Domain Complexed with Inositol 1,3-Bisphosphate, PDB code: 1hyi:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the EEA1 Fyve Domain Complexed with Inositol 1,3-Bisphosphate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the EEA1 Fyve Domain Complexed with Inositol 1,3-Bisphosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn66 b:0.0 occ:1.00 H A:CYS36 2.1 0.0 1.0 SG A:CYS36 2.4 0.0 1.0 SG A:CYS12 2.4 0.0 1.0 SG A:CYS39 2.4 0.0 1.0 HB2 A:CYS39 2.5 0.0 1.0 HG A:CYS15 2.5 0.0 1.0 SG A:CYS15 2.5 0.0 1.0 HB3 A:CYS15 2.9 0.0 1.0 HB3 A:CYS36 2.9 0.0 1.0 H A:CYS15 2.9 0.0 1.0 CB A:CYS39 2.9 0.0 1.0 HG A:CYS12 3.0 0.0 1.0 N A:CYS36 3.0 0.0 1.0 CB A:CYS36 3.1 0.0 1.0 HG A:CYS39 3.2 0.0 1.0 H A:CYS39 3.2 0.0 1.0 CB A:CYS15 3.2 0.0 1.0 HG A:CYS36 3.3 0.0 1.0 HB1 A:ALA14 3.3 0.0 1.0 HB2 A:CYS12 3.3 0.0 1.0 CB A:CYS12 3.4 0.0 1.0 HB3 A:CYS12 3.6 0.0 1.0 HB3 A:CYS39 3.6 0.0 1.0 N A:CYS15 3.6 0.0 1.0 CA A:CYS36 3.6 0.0 1.0 HA A:PHE35 3.7 0.0 1.0 N A:CYS39 3.8 0.0 1.0 H A:GLY16 4.0 0.0 1.0 HD1 A:PHE35 4.0 0.0 1.0 CA A:CYS39 4.0 0.0 1.0 C A:PHE35 4.1 0.0 1.0 HB2 A:CYS36 4.1 0.0 1.0 CA A:CYS15 4.1 0.0 1.0 HB2 A:CYS15 4.1 0.0 1.0 HB3 A:PHE35 4.1 0.0 1.0 HB3 A:GLU38 4.1 0.0 1.0 HG2 A:LYS17 4.2 0.0 1.0 O A:CYS36 4.3 0.0 1.0 CA A:PHE35 4.3 0.0 1.0 C A:CYS36 4.3 0.0 1.0 CB A:ALA14 4.3 0.0 1.0 H A:ALA14 4.3 0.0 1.0 HA A:CYS39 4.5 0.0 1.0 H A:GLU38 4.5 0.0 1.0 HA A:CYS36 4.6 0.0 1.0 C A:ALA14 4.6 0.0 1.0 H A:LYS17 4.6 0.0 1.0 HB3 A:ALA14 4.6 0.0 1.0 N A:GLY16 4.7 0.0 1.0 CB A:PHE35 4.7 0.0 1.0 CA A:CYS12 4.8 0.0 1.0 H A:MET13 4.8 0.0 1.0 OE1 A:GLU38 4.8 0.0 1.0 N A:ALA14 4.8 0.0 1.0 C A:CYS15 4.8 0.0 1.0 H A:SER40 4.9 0.0 1.0 CA A:ALA14 4.9 0.0 1.0 HG3 A:LYS17 4.9 0.0 1.0 C A:GLU38 4.9 0.0 1.0 CD1 A:PHE35 5.0 0.0 1.0 HA A:CYS15 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the EEA1 Fyve Domain Complexed with Inositol 1,3-Bisphosphate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the EEA1 Fyve Domain Complexed with Inositol 1,3-Bisphosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn67 b:0.0 occ:1.00 HG A:CYS59 2.0 0.0 1.0 HB3 A:CYS59 2.4 0.0 1.0 SG A:CYS59 2.7 0.0 1.0 SG A:CYS28 2.8 0.0 1.0 SG A:CYS31 2.9 0.0 1.0 SG A:CYS56 2.9 0.0 1.0 CB A:CYS59 3.0 0.0 1.0 H A:CYS56 3.0 0.0 1.0 HE2 A:PHE35 3.2 0.0 1.0 HB3 A:CYS56 3.3 0.0 1.0 HB2 A:CYS31 3.4 0.0 1.0 H A:CYS59 3.5 0.0 1.0 HB2 A:CYS59 3.5 0.0 1.0 HB2 A:CYS28 3.5 0.0 1.0 H A:CYS31 3.6 0.0 1.0 HG A:CYS31 3.6 0.0 1.0 CB A:CYS28 3.6 0.0 1.0 CB A:CYS56 3.7 0.0 1.0 HG A:CYS28 3.7 0.0 1.0 HB3 A:CYS28 3.8 0.0 1.0 HG A:CYS56 3.8 0.0 1.0 CB A:CYS31 3.8 0.0 1.0 N A:CYS56 3.9 0.0 1.0 HD21 A:ASN33 3.9 0.0 1.0 HB A:VAL55 4.0 0.0 1.0 CE2 A:PHE35 4.1 0.0 1.0 N A:CYS59 4.2 0.0 1.0 CA A:CYS59 4.2 0.0 1.0 HB2 A:GLN30 4.3 0.0 1.0 CA A:CYS56 4.4 0.0 1.0 HZ A:PHE35 4.4 0.0 1.0 HB3 A:CYS31 4.4 0.0 1.0 N A:CYS31 4.5 0.0 1.0 HB3 A:ALA58 4.5 0.0 1.0 HB2 A:CYS56 4.6 0.0 1.0 CZ A:PHE35 4.7 0.0 1.0 HB3 A:GLN30 4.7 0.0 1.0 HA A:CYS59 4.8 0.0 1.0 HB2 A:ASN33 4.8 0.0 1.0 HA A:VAL55 4.8 0.0 1.0 CA A:CYS31 4.8 0.0 1.0 ND2 A:ASN33 4.9 0.0 1.0 C A:VAL55 4.9 0.0 1.0 C A:CYS56 4.9 0.0 1.0 O A:CYS56 5.0 0.0 1.0 H A:PHE60 5.0 0.0 1.0 CB A:VAL55 5.0 0.0 1.0

T.Kutateladze, M.Overduin. Structural Mechanism of Endosome Docking By the Fyve Domain. Science V. 291 1793 2001.
ISSN: ISSN 0036-8075
PubMed: 11230696
DOI: 10.1126/SCIENCE.291.5509.1793