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Zinc in PDB 1hty: Golgi Alpha-Mannosidase II

Enzymatic activity of Golgi Alpha-Mannosidase II

All present enzymatic activity of Golgi Alpha-Mannosidase II:
3.2.1.114;

Protein crystallography data

The structure of Golgi Alpha-Mannosidase II, PDB code: 1hty was solved by J.M.H.Van Den Elsen, D.A.Kuntz, D.R.Rose, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 69.30 / 1.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.865, 109.718, 138.599, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 21

Zinc Binding Sites:

The binding sites of Zinc atom in the Golgi Alpha-Mannosidase II (pdb code 1hty). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Golgi Alpha-Mannosidase II, PDB code: 1hty:

Zinc binding site 1 out of 1 in 1hty

Go back to Zinc Binding Sites List in 1hty
Zinc binding site 1 out of 1 in the Golgi Alpha-Mannosidase II


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Golgi Alpha-Mannosidase II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1102

b:9.7
occ:1.00
OD1 A:ASP92 2.0 10.4 1.0
OD1 A:ASP204 2.1 10.1 1.0
NE2 A:HIS90 2.1 8.7 1.0
NE2 A:HIS471 2.1 8.4 1.0
O2 A:TRS1103 2.2 13.4 1.0
CG A:ASP92 2.9 10.6 1.0
CD2 A:HIS471 3.1 8.8 1.0
CD2 A:HIS90 3.1 9.5 1.0
CE1 A:HIS90 3.1 9.5 1.0
OD2 A:ASP92 3.1 12.3 1.0
CG A:ASP204 3.1 9.9 1.0
CE1 A:HIS471 3.1 8.2 1.0
C2 A:TRS1103 3.2 15.5 1.0
CB A:ASP204 3.5 9.2 1.0
OD2 A:ASP472 3.9 10.1 1.0
C A:TRS1103 4.2 15.7 1.0
ND1 A:HIS90 4.2 9.3 1.0
CG A:HIS471 4.2 7.7 1.0
CG A:HIS90 4.2 8.8 1.0
C3 A:TRS1103 4.2 16.0 1.0
ND1 A:HIS471 4.2 8.7 1.0
OD2 A:ASP204 4.2 10.6 1.0
O3 A:TRS1103 4.3 17.8 1.0
CB A:ASP92 4.3 9.4 1.0
NE2 A:HIS470 4.3 10.0 1.0
O A:HOH1196 4.4 12.1 1.0
C1 A:TRS1103 4.8 15.4 1.0
CA A:ASP92 4.9 9.5 1.0
OH A:TYR269 4.9 11.5 1.0
CG A:ASP472 5.0 9.3 1.0

Reference:

J.M.Van Den Elsen, D.A.Kuntz, D.R.Rose. Structure of Golgi Alpha-Mannosidase II: A Target For Inhibition of Growth and Metastasis of Cancer Cells. Embo J. V. 20 3008 2001.
ISSN: ISSN 0261-4189
PubMed: 11406577
DOI: 10.1093/EMBOJ/20.12.3008
Page generated: Sun Oct 13 02:34:22 2024

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