Zinc in PDB 1h1z: The Structure of the Cytosolic D-Ribulose-5-Phosphate 3-Epimerase From Rice Complexed with Sulfate and Zinc

All present enzymatic activity of The Structure of the Cytosolic D-Ribulose-5-Phosphate 3-Epimerase From Rice Complexed with Sulfate and Zinc:
5.1.3.1;

The structure of The Structure of the Cytosolic D-Ribulose-5-Phosphate 3-Epimerase From Rice Complexed with Sulfate and Zinc, PDB code: 1h1z was solved by S.Jelakovic, G.E.Schulz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.0 / 3.4
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	41.810, 73.070, 90.220, 90.00, 101.84, 90.00
R / Rfree (%)	20.2 / 25.6

The binding sites of Zinc atom in the The Structure of the Cytosolic D-Ribulose-5-Phosphate 3-Epimerase From Rice Complexed with Sulfate and Zinc (pdb code 1h1z). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Structure of the Cytosolic D-Ribulose-5-Phosphate 3-Epimerase From Rice Complexed with Sulfate and Zinc, PDB code: 1h1z:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the The Structure of the Cytosolic D-Ribulose-5-Phosphate 3-Epimerase From Rice Complexed with Sulfate and Zinc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of the Cytosolic D-Ribulose-5-Phosphate 3-Epimerase From Rice Complexed with Sulfate and Zinc within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1224 b:22.7 occ:1.00 ND1 A:HIS69 2.1 5.0 1.0 OD1 A:ASP38 2.2 27.8 1.0 NE2 A:HIS36 2.2 5.0 1.0 OD2 A:ASP178 2.5 50.9 1.0 CD2 A:HIS36 2.9 5.0 1.0 CE1 A:HIS69 2.9 5.0 1.0 CG A:ASP38 3.0 27.8 1.0 OD2 A:ASP38 3.1 27.8 1.0 CG A:HIS69 3.1 5.0 1.0 CG A:ASP178 3.2 50.9 1.0 CE1 A:HIS36 3.4 5.0 1.0 CB A:HIS69 3.5 5.0 1.0 OD1 A:ASP178 3.7 50.9 1.0 CD2 A:LEU142 4.1 27.2 1.0 CB A:ASP178 4.1 50.9 1.0 NE2 A:HIS69 4.1 5.0 1.0 CG A:HIS36 4.2 5.0 1.0 CD2 A:HIS69 4.2 5.0 1.0 ND1 A:HIS36 4.4 5.0 1.0 CB A:ASP38 4.4 27.8 1.0 CE A:MET71 4.5 29.1 1.0

Zinc binding site 2 out of 2 in the The Structure of the Cytosolic D-Ribulose-5-Phosphate 3-Epimerase From Rice Complexed with Sulfate and Zinc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of the Cytosolic D-Ribulose-5-Phosphate 3-Epimerase From Rice Complexed with Sulfate and Zinc within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1224 b:5.0 occ:1.00 OD1 B:ASP38 2.0 5.0 1.0 ND1 B:HIS69 2.0 6.4 1.0 NE2 B:HIS36 2.3 5.0 1.0 OD2 B:ASP178 2.5 9.4 1.0 CG B:ASP38 2.8 5.0 1.0 CE1 B:HIS69 2.9 6.4 1.0 CD2 B:HIS36 2.9 5.0 1.0 OD2 B:ASP38 3.0 5.0 1.0 CG B:HIS69 3.1 6.4 1.0 CG B:ASP178 3.2 9.4 1.0 CE1 B:HIS36 3.5 5.0 1.0 CB B:HIS69 3.5 6.4 1.0 OD1 B:ASP178 3.7 9.4 1.0 NE2 B:HIS69 4.1 6.4 1.0 CD2 B:HIS69 4.2 6.4 1.0 CB B:ASP178 4.2 9.4 1.0 CG B:HIS36 4.2 5.0 1.0 CD2 B:LEU142 4.3 25.6 1.0 CB B:ASP38 4.3 5.0 1.0 CE B:MET71 4.4 6.4 1.0 ND1 B:HIS36 4.5 5.0 1.0 CA B:ASP38 4.9 5.0 1.0

S.Jelakovic, S.Kopriva, K.Suss, G.E.Schulz. Structure and Catalytic Mechanism of the Cytosolic D-Ribulose-5-Phosphate 3-Epimerase From Rice J.Mol.Biol. V. 326 127 2003.
ISSN: ISSN 0022-2836
PubMed: 12547196
DOI: 10.1016/S0022-2836(02)01374-8