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Zinc in PDB 1fjv: Thermolysin (60% Acetonitrile Soaked Crystals)

Enzymatic activity of Thermolysin (60% Acetonitrile Soaked Crystals)

All present enzymatic activity of Thermolysin (60% Acetonitrile Soaked Crystals):
3.4.24.27;

Protein crystallography data

The structure of Thermolysin (60% Acetonitrile Soaked Crystals), PDB code: 1fjv was solved by A.C.English, C.R.Groom, R.E.Hubbard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.973, 93.973, 131.122, 90.00, 90.00, 120.00
R / Rfree (%) 15.3 / 20.6

Other elements in 1fjv:

The structure of Thermolysin (60% Acetonitrile Soaked Crystals) also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Thermolysin (60% Acetonitrile Soaked Crystals) (pdb code 1fjv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Thermolysin (60% Acetonitrile Soaked Crystals), PDB code: 1fjv:

Zinc binding site 1 out of 1 in 1fjv

Go back to Zinc Binding Sites List in 1fjv
Zinc binding site 1 out of 1 in the Thermolysin (60% Acetonitrile Soaked Crystals)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Thermolysin (60% Acetonitrile Soaked Crystals) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:20.8
occ:1.00
O A:HOH507 2.0 24.6 1.0
NE2 A:HIS146 2.0 19.4 1.0
NE2 A:HIS142 2.0 19.0 1.0
OE1 A:GLU166 2.2 25.1 1.0
OE2 A:GLU166 2.3 29.1 1.0
CD A:GLU166 2.8 26.4 1.0
CE1 A:HIS146 3.0 18.1 1.0
CE1 A:HIS142 3.0 18.8 1.0
CD2 A:HIS146 3.1 20.2 1.0
CD2 A:HIS142 3.1 18.9 1.0
OE2 A:GLU143 3.7 27.7 1.0
OH A:TYR157 3.8 20.9 0.4
ND1 A:HIS146 4.1 18.8 1.0
ND1 A:HIS142 4.2 17.6 1.0
CG A:HIS146 4.2 15.4 1.0
CG A:HIS142 4.2 19.8 1.0
CG A:GLU166 4.3 16.9 1.0
CB A:SER169 4.3 15.9 1.0
CD A:GLU143 4.5 23.1 1.0
NE2 A:HIS231 4.5 28.3 1.0
OE1 A:GLU143 4.5 24.0 1.0
CA A:GLU166 4.6 14.9 1.0
OG A:SER169 4.6 17.1 1.0
O A:HOH589 4.7 40.4 1.0
CB A:GLU166 4.8 17.1 1.0
CZ A:TYR157 4.9 20.8 0.4
CD2 A:HIS231 5.0 33.8 1.0
CE1 A:TYR157 5.0 25.5 0.4

Reference:

A.C.English, C.R.Groom, R.E.Hubbard. Experimental and Computational Mapping of the Binding Surface of A Crystalline Protein. Protein Eng. V. 14 47 2001.
ISSN: ISSN 0269-2139
PubMed: 11287678
DOI: 10.1093/PROTEIN/14.1.47
Page generated: Wed Dec 16 02:49:19 2020

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