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Zinc in PDB 1e31: Survivin Dimer H. Sapiens

Protein crystallography data

The structure of Survivin Dimer H. Sapiens, PDB code: 1e31 was solved by L.Chantalat, D.A.Skoufias, R.L.Margolis, O.Dideberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.76 / 2.71
Space group I 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 82.220, 71.050, 89.450, 90.00, 96.12, 90.00
R / Rfree (%) 23.5 / 27

Other elements in 1e31:

The structure of Survivin Dimer H. Sapiens also contains other interesting chemical elements:

Cobalt (Co) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Survivin Dimer H. Sapiens (pdb code 1e31). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Survivin Dimer H. Sapiens, PDB code: 1e31:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1e31

Go back to Zinc Binding Sites List in 1e31
Zinc binding site 1 out of 2 in the Survivin Dimer H. Sapiens


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Survivin Dimer H. Sapiens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn801

b:67.0
occ:1.00
NE2 A:HIS77 2.3 73.4 1.0
SG A:CYS57 2.3 58.8 1.0
SG A:CYS60 2.3 69.0 1.0
SG A:CYS84 2.4 76.9 1.0
CE1 A:HIS77 2.9 72.0 1.0
CB A:CYS57 3.1 59.7 1.0
CB A:CYS84 3.4 77.4 1.0
CB A:CYS60 3.4 66.3 1.0
CD2 A:HIS77 3.5 73.1 1.0
N A:CYS60 3.7 60.4 1.0
ND1 A:HIS77 4.1 72.1 1.0
CA A:CYS60 4.2 60.0 1.0
CG A:HIS77 4.4 73.7 1.0
OG A:SER81 4.5 73.8 1.0
CB A:PHE59 4.5 54.4 1.0
CA A:CYS57 4.6 56.9 1.0
CA A:CYS84 4.8 76.6 1.0
C A:PHE59 4.8 55.4 1.0
CB A:SER81 4.9 76.9 1.0
N A:PHE61 4.9 65.8 1.0
C A:CYS60 4.9 60.9 1.0

Zinc binding site 2 out of 2 in 1e31

Go back to Zinc Binding Sites List in 1e31
Zinc binding site 2 out of 2 in the Survivin Dimer H. Sapiens


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Survivin Dimer H. Sapiens within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn801

b:67.2
occ:1.00
SG B:CYS57 2.2 65.8 1.0
NE2 B:HIS77 2.3 72.5 1.0
SG B:CYS60 2.4 73.9 1.0
SG B:CYS84 2.4 68.9 1.0
CE1 B:HIS77 2.7 70.8 1.0
CB B:CYS57 3.1 67.6 1.0
CB B:CYS84 3.2 70.9 1.0
CB B:CYS60 3.3 73.5 1.0
CD2 B:HIS77 3.5 69.5 1.0
N B:CYS60 3.7 59.6 1.0
ND1 B:HIS77 4.0 68.5 1.0
CA B:CYS60 4.1 59.8 1.0
CG B:HIS77 4.4 71.5 1.0
CA B:CYS84 4.5 73.0 1.0
OG B:SER81 4.5 72.9 1.0
CA B:CYS57 4.6 61.1 1.0
CB B:PHE59 4.6 57.1 1.0
C B:PHE59 4.7 59.8 1.0
N B:PHE61 4.9 73.4 1.0
C B:CYS60 4.9 60.7 1.0
CB B:SER81 4.9 71.8 1.0
N B:PHE59 5.0 58.3 1.0
CA B:PHE59 5.0 58.8 1.0

Reference:

L.Chantalat, D.A.Skoufias, J.P.Kleman, B.Jung, O.Dideberg, R.L.Margolis. Crystal Structure of Human Survivin Reveals A Bow Tie-Shaped Dimer with Two Unusual Alpha-Helical Extensions Mol.Cell V. 6 183 2000.
ISSN: ISSN 1097-2765
PubMed: 10949039
DOI: 10.1016/S1097-2765(00)00019-8
Page generated: Sat Oct 12 23:58:59 2024

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