The binding sites of Zinc atom in the structure of Crystal Structure of APO2L/Trail (pdb code 1dg6). This binding sites where shown with 5.0 Angstroms radius around Zinc atom. The 1dg6 structure was solved by S.G.HYMOWITZ, M.P.O'CONNELL, M.H.ULTSCH, A.M.DE VOS, R.F.KELLEY, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A) | 20.0-1.3 | Space group | H32 | a (A) | 66.435 | b (A) | 66.435 | c (A) | 197.727 | alpha (°) | 90.00 | beta (°) | 90.00 | gamma (°) | 120.00 | Rfactor (%) | 14.1 | Rfree (%) | 19.7 |
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Zinc binding site 1 out of 1 in 1dg6
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Zinc in the PDB 1dg6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Cys230, A: Trp231, A: Ser232, A: Cl406, A: Hoh514, | conact list:
Atom | Atom | Distance (A) | Zn | N A:Cys230 | 4.85 | Zn | CB A:Cys230 | 3.29 | Zn | SG A:Cys230 | 2.34 | Zn | C A:Cys230 | 4.27 | Zn | CA A:Cys230 | 3.61 | Zn | N A:Trp231 | 4.03 | Zn | N A:Ser232 | 4.71 | Zn | CL A:Cl406 | 2.34 | Zn | O A:Hoh514 | 4.95 |
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