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Zinc in PDB 1dcq: Crystal Structure of the Arf-Gap Domain and Ankyrin Repeats of Papbeta.

Protein crystallography data

The structure of Crystal Structure of the Arf-Gap Domain and Ankyrin Repeats of Papbeta., PDB code: 1dcq was solved by V.Mandiyan, J.Andreev, J.Schlessinger, S.R.Hubbard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.10
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 73.935, 132.208, 59.817, 90.00, 90.00, 90.00
R / Rfree (%) 21.3 / 26.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Arf-Gap Domain and Ankyrin Repeats of Papbeta. (pdb code 1dcq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Arf-Gap Domain and Ankyrin Repeats of Papbeta., PDB code: 1dcq:

Zinc binding site 1 out of 1 in 1dcq

Go back to Zinc Binding Sites List in 1dcq
Zinc binding site 1 out of 1 in the Crystal Structure of the Arf-Gap Domain and Ankyrin Repeats of Papbeta.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Arf-Gap Domain and Ankyrin Repeats of Papbeta. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn600

b:26.7
occ:1.00
SG A:CYS287 2.2 29.4 1.0
SG A:CYS267 2.3 28.2 1.0
SG A:CYS264 2.3 28.8 1.0
SG A:CYS284 2.4 28.5 1.0
CB A:CYS267 3.2 26.6 1.0
CB A:CYS287 3.3 30.8 1.0
CB A:CYS264 3.3 25.6 1.0
NH1 A:ARG350 3.4 29.1 1.0
CB A:CYS284 3.4 30.0 1.0
N A:CYS267 3.8 25.2 1.0
N A:CYS284 3.8 30.0 1.0
CA A:CYS267 4.0 27.1 1.0
N A:CYS287 4.2 29.7 1.0
CA A:CYS284 4.2 29.9 1.0
O A:HOH61 4.3 33.4 1.0
CA A:CYS287 4.4 31.2 1.0
CB A:ALA269 4.4 24.3 1.0
C A:ASP266 4.5 25.3 1.0
C A:CYS267 4.7 28.5 1.0
CZ A:ARG350 4.7 30.3 1.0
CA A:CYS264 4.8 24.7 1.0
O A:CYS284 4.8 30.1 1.0
C A:CYS284 4.8 30.4 1.0
CB A:ASP266 4.9 21.7 1.0
N A:GLY268 4.9 28.1 1.0
N A:ALA269 4.9 27.8 1.0
CB A:THR283 4.9 23.6 1.0
C A:THR283 5.0 27.6 1.0

Reference:

V.Mandiyan, J.Andreev, J.Schlessinger, S.R.Hubbard. Crystal Structure of the Arf-Gap Domain and Ankyrin Repeats of PYK2-Associated Protein Beta. Embo J. V. 18 6890 1999.
ISSN: ISSN 0261-4189
PubMed: 10601011
DOI: 10.1093/EMBOJ/18.24.6890
Page generated: Mon Jan 25 16:08:18 2021

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