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Zinc in PDB 1d9z: Crystal Structure of the Dna Repair Protein Uvrb in Complex with Atp

Protein crystallography data

The structure of Crystal Structure of the Dna Repair Protein Uvrb in Complex with Atp, PDB code: 1d9z was solved by K.Theis, P.J.Chen, M.Skorvaga, B.Van Houten, C.Kisker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.15
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 153.443, 153.443, 80.741, 90.00, 90.00, 120.00
R / Rfree (%) 26.2 / 33.5

Other elements in 1d9z:

The structure of Crystal Structure of the Dna Repair Protein Uvrb in Complex with Atp also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Dna Repair Protein Uvrb in Complex with Atp (pdb code 1d9z). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Dna Repair Protein Uvrb in Complex with Atp, PDB code: 1d9z:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1d9z

Go back to Zinc Binding Sites List in 1d9z
Zinc binding site 1 out of 2 in the Crystal Structure of the Dna Repair Protein Uvrb in Complex with Atp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Dna Repair Protein Uvrb in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn701

b:89.3
occ:1.00
NE2 A:HIS403 2.1 44.7 1.0
CE1 A:HIS403 3.1 44.8 1.0
CD2 A:HIS403 3.2 44.4 1.0
OE1 A:GLU383 4.0 61.3 1.0
ND1 A:HIS403 4.3 43.0 1.0
CG A:HIS403 4.3 44.5 1.0

Zinc binding site 2 out of 2 in 1d9z

Go back to Zinc Binding Sites List in 1d9z
Zinc binding site 2 out of 2 in the Crystal Structure of the Dna Repair Protein Uvrb in Complex with Atp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Dna Repair Protein Uvrb in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn702

b:0.9
occ:1.00
NE2 A:HIS581 2.3 58.8 1.0
CD2 A:HIS581 3.2 55.7 1.0
NZ A:LYS580 3.4 56.6 1.0
CE1 A:HIS581 3.4 51.6 1.0
OH A:TYR577 4.3 40.5 1.0
CG A:HIS581 4.4 56.4 1.0
ND1 A:HIS581 4.5 54.1 1.0
CE1 A:TYR577 4.5 32.3 1.0
CE A:LYS580 4.8 63.5 1.0
CZ A:TYR577 4.8 35.6 1.0

Reference:

K.Theis, P.J.Chen, M.Skorvaga, B.Van Houten, C.Kisker. Crystal Structure of Uvrb, A Dna Helicase Adapted For Nucleotide Excision Repair. Embo J. V. 18 6899 1999.
ISSN: ISSN 0261-4189
PubMed: 10601012
DOI: 10.1093/EMBOJ/18.24.6899
Page generated: Mon Jan 25 16:08:19 2021

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