Zinc in PDB 1d0g: Crystal Structure of Death Receptor 5 (DR5) Bound to APO2L/Trail

The structure of Crystal Structure of Death Receptor 5 (DR5) Bound to APO2L/Trail, PDB code: 1d0g was solved by S.G.Hymowitz, H.W.Christinger, G.Fuh, M.P.O'connell, R.F.Kelley, A.Ashkenazi, A.M.De Vos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	66.818, 111.019, 130.807, 90.00, 90.00, 90.00
R / Rfree (%)	22.2 / 26.7

The structure of Crystal Structure of Death Receptor 5 (DR5) Bound to APO2L/Trail also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Zinc atom in the Crystal Structure of Death Receptor 5 (DR5) Bound to APO2L/Trail (pdb code 1d0g). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Death Receptor 5 (DR5) Bound to APO2L/Trail, PDB code: 1d0g:

Zinc binding site 1 out of 1 in the Crystal Structure of Death Receptor 5 (DR5) Bound to APO2L/Trail


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Death Receptor 5 (DR5) Bound to APO2L/Trail within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn300 b:44.9 occ:1.00 SG B:CYS230 2.3 33.3 1.0 CL B:CL400 2.3 29.8 1.0 SG A:CYS230 2.4 34.0 1.0 SG D:CYS230 2.4 31.5 1.0 CB B:CYS230 3.2 31.6 1.0 CB A:CYS230 3.3 30.2 1.0 CB D:CYS230 3.3 27.0 1.0 CA B:CYS230 3.6 32.5 1.0 CA D:CYS230 3.6 27.2 1.0 CA A:CYS230 3.7 28.7 1.0 N B:TRP231 4.0 31.2 1.0 N D:TRP231 4.0 30.6 1.0 N A:TRP231 4.0 30.9 1.0 C B:CYS230 4.2 33.5 1.0 C D:CYS230 4.3 29.4 1.0 C A:CYS230 4.3 29.6 1.0 N D:SER232 4.7 36.9 1.0 N B:SER232 4.7 32.8 1.0 N A:SER232 4.8 35.0 1.0 N D:CYS230 4.9 28.0 1.0 N B:CYS230 4.9 32.8 1.0 N A:CYS230 5.0 29.1 1.0

S.G.Hymowitz, H.W.Christinger, G.Fuh, M.Ultsch, M.O'connell, R.F.Kelley, A.Ashkenazi, A.M.De Vos. Triggering Cell Death: the Crystal Structure of APO2L/Trail in A Complex with Death Receptor 5. Mol.Cell V. 4 563 1999.
ISSN: ISSN 1097-2765
PubMed: 10549288
DOI: 10.1016/S1097-2765(00)80207-5