Zinc in PDB 1bfv: Monoclonal Antibody Fragment FV4155 From E. Coli

The structure of Monoclonal Antibody Fragment FV4155 From E. Coli, PDB code: 1bfv was solved by C.H.Trinh, S.E.V.Phillips, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.10
Space group	P 4 21 2
Cell size a, b, c (Å), α, β, γ (°)	89.900, 89.900, 59.900, 90.00, 90.00, 90.00
R / Rfree (%)	18.7 / 27.1

The binding sites of Zinc atom in the Monoclonal Antibody Fragment FV4155 From E. Coli (pdb code 1bfv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Monoclonal Antibody Fragment FV4155 From E. Coli, PDB code: 1bfv:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Monoclonal Antibody Fragment FV4155 From E. Coli


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Monoclonal Antibody Fragment FV4155 From E. Coli within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn200 b:21.6 occ:1.00 OE2 L:GLU3 2.1 20.5 1.0 O L:ASP1 2.2 16.1 1.0 O L:HOH257 2.2 24.1 1.0 N L:ASP1 2.3 17.8 1.0 CD L:GLU3 2.9 19.0 1.0 C L:ASP1 2.9 16.8 1.0 OD1 L:ASP1 3.0 33.0 1.0 OE1 L:GLU3 3.1 19.0 1.0 CA L:ASP1 3.1 18.6 1.0 ZN L:ZN201 3.4 18.0 0.5 CG L:ASP1 4.0 27.8 1.0 O L:HOH256 4.0 13.7 1.0 O L:HOH262 4.1 23.2 1.0 CB L:ASP1 4.1 25.8 1.0 N L:ILE2 4.2 16.0 1.0 CG L:GLU3 4.4 24.6 1.0 N L:GLU3 4.7 15.1 1.0 CA L:ILE2 4.8 15.7 1.0 C L:ILE2 5.0 15.1 1.0

Zinc binding site 2 out of 3 in the Monoclonal Antibody Fragment FV4155 From E. Coli


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Monoclonal Antibody Fragment FV4155 From E. Coli within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn201 b:18.0 occ:0.50 OE1 L:GLU3 1.9 19.0 1.0 OD1 L:ASP1 2.5 33.0 1.0 CD L:GLU3 2.8 19.0 1.0 O L:HOH257 3.2 24.1 1.0 OE2 L:GLU3 3.2 20.5 1.0 ZN L:ZN200 3.4 21.6 1.0 CG L:ASP1 3.6 27.8 1.0 CG L:GLU3 3.7 24.6 1.0 O L:HOH261 3.8 10.5 1.0 OD2 L:ASP1 4.0 34.7 1.0 N L:ASP1 4.5 17.8 1.0 O L:ASP1 4.5 16.1 1.0 C L:ASP1 4.8 16.8 1.0 CB L:ASP1 4.8 25.8 1.0 CA L:ASP1 4.9 18.6 1.0 CB L:GLU3 4.9 18.7 1.0

Zinc binding site 3 out of 3 in the Monoclonal Antibody Fragment FV4155 From E. Coli


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Monoclonal Antibody Fragment FV4155 From E. Coli within 5.0Å range: probe atom residue distance (Å) B Occ H:Zn201 b:40.6 occ:1.00 OE1 H:GLU89 2.3 46.1 1.0 OE2 H:GLU89 2.6 51.6 1.0 CD H:GLU89 2.7 39.5 1.0 O H:HOH275 2.7 31.1 1.0 O H:HOH207 3.6 17.1 1.0 CG H:GLU89 4.1 39.5 1.0

C.H.Trinh, S.D.Hemmington, M.E.Verhoeyen, S.E.Phillips. Antibody Fragment FV4155 Bound to Two Closely Related Steroid Hormones: the Structural Basis of Fine Specificity. Structure V. 5 937 1997.
ISSN: ISSN 0969-2126
PubMed: 9261086
DOI: 10.1016/S0969-2126(97)00247-5