Zinc in PDB 1aol: Friend Murine Leukemia Virus Receptor-Binding Domain

The structure of Friend Murine Leukemia Virus Receptor-Binding Domain, PDB code: 1aol was solved by D.Fass, R.A.Davey, C.A.Hamson, P.S.Kim, J.M.Cunningham, J.M.Berger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	55.300, 68.400, 80.400, 90.00, 90.00, 90.00
R / Rfree (%)	22.3 / 26.4

The binding sites of Zinc atom in the Friend Murine Leukemia Virus Receptor-Binding Domain (pdb code 1aol). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Friend Murine Leukemia Virus Receptor-Binding Domain, PDB code: 1aol:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Friend Murine Leukemia Virus Receptor-Binding Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Friend Murine Leukemia Virus Receptor-Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn430 b:23.4 occ:1.00 O A:HOH419 2.3 15.4 1.0 O A:HOH418 2.3 22.6 1.0 O A:HOH343 2.4 17.1 1.0 OD2 A:ASP86 2.6 18.4 1.0 O A:HOH284 3.4 33.0 1.0 CG A:ASP86 3.5 16.7 1.0 O A:HOH420 3.6 19.3 1.0 OD1 A:ASP86 3.6 13.7 1.0 ZN A:ZN431 3.7 19.0 1.0 CB A:ASP86 4.8 14.4 1.0

Zinc binding site 2 out of 3 in the Friend Murine Leukemia Virus Receptor-Binding Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Friend Murine Leukemia Virus Receptor-Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn431 b:19.0 occ:1.00 O A:HOH420 2.3 19.3 1.0 OD1 A:ASP86 2.4 13.7 1.0 CG A:ASP86 3.5 16.7 1.0 O A:HOH343 3.7 17.1 1.0 ZN A:ZN430 3.7 23.4 1.0 OD2 A:ASP86 3.8 18.4 1.0 O A:HOH282 4.0 41.6 1.0 OG A:SER84 4.2 18.2 1.0 CB A:ASP86 4.7 14.4 1.0 N A:ASP86 4.7 15.1 1.0 CB A:ARG85 4.8 20.2 1.0 N A:ARG85 5.0 14.8 1.0

Zinc binding site 3 out of 3 in the Friend Murine Leukemia Virus Receptor-Binding Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Friend Murine Leukemia Virus Receptor-Binding Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn432 b:21.2 occ:1.00 O A:HOH338 2.4 16.6 1.0 O A:HOH339 2.4 25.7 1.0 ND1 A:HIS55 2.6 16.8 1.0 O A:HOH384 3.0 50.9 1.0 CG A:HIS55 3.3 17.4 1.0 CB A:HIS55 3.5 12.8 1.0 CE1 A:HIS55 3.7 19.8 1.0 CA A:HIS55 4.1 12.9 1.0 CD2 A:HIS55 4.5 18.7 1.0 CB A:PRO218 4.6 11.3 1.0 NE2 A:HIS55 4.7 21.9 1.0 O A:HIS55 4.9 13.3 1.0 CZ A:ARG216 5.0 48.0 1.0

D.Fass, R.A.Davey, C.A.Hamson, P.S.Kim, J.M.Cunningham, J.M.Berger. Structure of A Murine Leukemia Virus Receptor-Binding Glycoprotein at 2.0 Angstrom Resolution. Science V. 277 1662 1997.
ISSN: ISSN 0036-8075
PubMed: 9287219
DOI: 10.1126/SCIENCE.277.5332.1662