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Zinc in PDB 1ajy: Structure and Mobility of the PUT3 Dimer: A Dna Pincer, uc(Nmr), 13 Structures

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure and Mobility of the PUT3 Dimer: A Dna Pincer, uc(Nmr), 13 Structures (pdb code 1ajy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure and Mobility of the PUT3 Dimer: A Dna Pincer, uc(Nmr), 13 Structures, PDB code: 1ajy:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 1ajy

Go back to Zinc Binding Sites List in 1ajy
Zinc binding site 1 out of 4 in the Structure and Mobility of the PUT3 Dimer: A Dna Pincer, uc(Nmr), 13 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure and Mobility of the PUT3 Dimer: A Dna Pincer, uc(Nmr), 13 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:0.0
occ:1.00
SG A:CYS44 2.3 0.0 1.0
SG A:CYS37 2.6 0.0 1.0
SG A:CYS34 2.7 0.0 1.0
H A:CYS34 2.7 0.0 1.0
SG A:CYS50 2.7 0.0 1.0
HB2 A:CYS44 2.8 0.0 1.0
CB A:CYS44 3.0 0.0 1.0
HB2 A:CYS34 3.1 0.0 1.0
ZN A:ZN102 3.1 0.0 1.0
HD2 A:PRO45 3.2 0.0 1.0
HB2 A:CYS50 3.3 0.0 1.0
HA A:CYS44 3.3 0.0 1.0
CB A:CYS50 3.4 0.0 1.0
HB2 A:LYS52 3.4 0.0 1.0
HB3 A:CYS50 3.4 0.0 1.0
CB A:CYS34 3.4 0.0 1.0
N A:CYS34 3.6 0.0 1.0
HB2 A:CYS37 3.7 0.0 1.0
CB A:CYS37 3.7 0.0 1.0
CA A:CYS44 3.7 0.0 1.0
HB3 A:CYS44 4.0 0.0 1.0
SG A:CYS53 4.0 0.0 1.0
HB2 A:CYS53 4.0 0.0 1.0
HB3 A:CYS37 4.1 0.0 1.0
HA A:ALA33 4.1 0.0 1.0
H A:CYS53 4.1 0.0 1.0
HE1 A:TYR62 4.2 0.0 1.0
CD A:PRO45 4.2 0.0 1.0
H A:GLN51 4.2 0.0 1.0
CA A:CYS34 4.2 0.0 1.0
H A:LYS52 4.3 0.0 1.0
HB3 A:CYS34 4.3 0.0 1.0
HD3 A:PRO45 4.4 0.0 1.0
CB A:LYS52 4.4 0.0 1.0
HB3 A:CYS60 4.4 0.0 1.0
OH A:TYR62 4.5 0.0 1.0
H A:CYS37 4.5 0.0 1.0
HB3 A:ALA33 4.6 0.0 1.0
CB A:CYS53 4.6 0.0 1.0
HB3 A:LYS52 4.6 0.0 1.0
C A:ALA33 4.7 0.0 1.0
C A:CYS44 4.7 0.0 1.0
N A:CYS53 4.7 0.0 1.0
HA A:CYS60 4.7 0.0 1.0
CA A:ALA33 4.8 0.0 1.0
HH A:TYR62 4.8 0.0 1.0
N A:PRO45 4.8 0.0 1.0
N A:CYS44 4.8 0.0 1.0
CA A:CYS50 4.9 0.0 1.0
N A:LYS52 4.9 0.0 1.0
HA A:CYS34 4.9 0.0 1.0
H A:CYS50 5.0 0.0 1.0
H A:CYS44 5.0 0.0 1.0

Zinc binding site 2 out of 4 in 1ajy

Go back to Zinc Binding Sites List in 1ajy
Zinc binding site 2 out of 4 in the Structure and Mobility of the PUT3 Dimer: A Dna Pincer, uc(Nmr), 13 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure and Mobility of the PUT3 Dimer: A Dna Pincer, uc(Nmr), 13 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn102

b:0.0
occ:1.00
HA A:CYS60 2.0 0.0 1.0
SG A:CYS34 2.3 0.0 1.0
HB2 A:CYS53 2.4 0.0 1.0
HB3 A:CYS60 2.5 0.0 1.0
SG A:CYS50 2.7 0.0 1.0
CA A:CYS60 2.7 0.0 1.0
HB2 A:CYS34 2.7 0.0 1.0
CB A:CYS60 2.7 0.0 1.0
CB A:CYS34 2.8 0.0 1.0
HB3 A:CYS34 2.8 0.0 1.0
SG A:CYS60 2.9 0.0 1.0
SG A:CYS53 2.9 0.0 1.0
CB A:CYS53 2.9 0.0 1.0
O A:ILE59 3.1 0.0 1.0
ZN A:ZN101 3.1 0.0 1.0
HB3 A:CYS53 3.2 0.0 1.0
N A:CYS60 3.5 0.0 1.0
C A:ILE59 3.6 0.0 1.0
H A:CYS50 3.8 0.0 1.0
HB2 A:CYS60 3.8 0.0 1.0
H A:GLU61 3.9 0.0 1.0
C A:CYS60 4.0 0.0 1.0
HB3 A:CYS50 4.0 0.0 1.0
H A:CYS53 4.0 0.0 1.0
CB A:CYS50 4.1 0.0 1.0
SG A:CYS37 4.1 0.0 1.0
HB2 A:SER36 4.2 0.0 1.0
CA A:CYS34 4.3 0.0 1.0
H A:CYS60 4.3 0.0 1.0
CA A:CYS53 4.3 0.0 1.0
H A:CYS34 4.3 0.0 1.0
N A:GLU61 4.4 0.0 1.0
HB2 A:ALA58 4.4 0.0 1.0
N A:CYS53 4.5 0.0 1.0
N A:CYS50 4.7 0.0 1.0
HA A:CYS34 4.7 0.0 1.0
H A:CYS37 4.7 0.0 1.0
H A:VAL54 4.7 0.0 1.0
H A:SER36 4.7 0.0 1.0
N A:CYS34 4.7 0.0 1.0
HB2 A:CYS50 4.8 0.0 1.0
HA A:CYS53 4.9 0.0 1.0
CA A:ILE59 4.9 0.0 1.0
O A:CYS60 5.0 0.0 1.0

Zinc binding site 3 out of 4 in 1ajy

Go back to Zinc Binding Sites List in 1ajy
Zinc binding site 3 out of 4 in the Structure and Mobility of the PUT3 Dimer: A Dna Pincer, uc(Nmr), 13 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure and Mobility of the PUT3 Dimer: A Dna Pincer, uc(Nmr), 13 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn101

b:0.0
occ:1.00
SG B:CYS44 2.4 0.0 1.0
SG B:CYS34 2.6 0.0 1.0
H B:CYS34 2.7 0.0 1.0
SG B:CYS50 2.7 0.0 1.0
SG B:CYS37 2.7 0.0 1.0
HB2 B:CYS50 3.1 0.0 1.0
HB2 B:CYS44 3.2 0.0 1.0
HB2 B:CYS34 3.2 0.0 1.0
ZN B:ZN102 3.2 0.0 1.0
HB3 B:CYS50 3.2 0.0 1.0
CB B:CYS50 3.2 0.0 1.0
CB B:CYS44 3.3 0.0 1.0
CB B:CYS34 3.5 0.0 1.0
HD2 B:PRO45 3.5 0.0 1.0
HA B:CYS44 3.6 0.0 1.0
HB2 B:LYS52 3.6 0.0 1.0
N B:CYS34 3.6 0.0 1.0
HB2 B:CYS37 3.7 0.0 1.0
OH B:TYR62 3.8 0.0 1.0
CB B:CYS37 3.8 0.0 1.0
HB2 B:CYS53 4.0 0.0 1.0
CA B:CYS44 4.0 0.0 1.0
HA B:ALA33 4.0 0.0 1.0
HB3 B:CYS37 4.1 0.0 1.0
HE1 B:TYR62 4.1 0.0 1.0
H B:GLN51 4.1 0.0 1.0
H B:CYS53 4.2 0.0 1.0
HB3 B:CYS44 4.2 0.0 1.0
CA B:CYS34 4.3 0.0 1.0
HB3 B:ALA33 4.3 0.0 1.0
HH B:TYR62 4.3 0.0 1.0
SG B:CYS53 4.3 0.0 1.0
HB3 B:CYS34 4.4 0.0 1.0
HB3 B:CYS60 4.4 0.0 1.0
H B:LYS52 4.4 0.0 1.0
CD B:PRO45 4.5 0.0 1.0
H B:CYS37 4.6 0.0 1.0
HD3 B:PRO45 4.6 0.0 1.0
C B:ALA33 4.6 0.0 1.0
CB B:LYS52 4.6 0.0 1.0
CA B:ALA33 4.7 0.0 1.0
CB B:CYS53 4.7 0.0 1.0
CZ B:TYR62 4.7 0.0 1.0
CA B:CYS50 4.7 0.0 1.0
CE1 B:TYR62 4.8 0.0 1.0
H B:CYS50 4.8 0.0 1.0
N B:CYS53 4.9 0.0 1.0
HA B:CYS34 4.9 0.0 1.0
HA B:CYS60 4.9 0.0 1.0
N B:GLN51 5.0 0.0 1.0
HB3 B:LYS52 5.0 0.0 1.0

Zinc binding site 4 out of 4 in 1ajy

Go back to Zinc Binding Sites List in 1ajy
Zinc binding site 4 out of 4 in the Structure and Mobility of the PUT3 Dimer: A Dna Pincer, uc(Nmr), 13 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure and Mobility of the PUT3 Dimer: A Dna Pincer, uc(Nmr), 13 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn102

b:0.0
occ:1.00
HA B:CYS60 2.1 0.0 1.0
SG B:CYS34 2.3 0.0 1.0
HB2 B:CYS53 2.3 0.0 1.0
HB3 B:CYS60 2.5 0.0 1.0
HB2 B:CYS34 2.6 0.0 1.0
SG B:CYS50 2.7 0.0 1.0
CB B:CYS34 2.7 0.0 1.0
HB3 B:CYS34 2.7 0.0 1.0
CB B:CYS60 2.8 0.0 1.0
CA B:CYS60 2.8 0.0 1.0
SG B:CYS60 2.9 0.0 1.0
CB B:CYS53 2.9 0.0 1.0
SG B:CYS53 2.9 0.0 1.0
HB3 B:CYS53 3.1 0.0 1.0
ZN B:ZN101 3.2 0.0 1.0
O B:ILE59 3.4 0.0 1.0
N B:CYS60 3.6 0.0 1.0
C B:ILE59 3.8 0.0 1.0
HB2 B:CYS60 3.9 0.0 1.0
H B:CYS50 4.0 0.0 1.0
H B:GLU61 4.0 0.0 1.0
H B:CYS53 4.0 0.0 1.0
C B:CYS60 4.1 0.0 1.0
SG B:CYS37 4.1 0.0 1.0
HB3 B:CYS50 4.1 0.0 1.0
CB B:CYS50 4.1 0.0 1.0
CA B:CYS34 4.2 0.0 1.0
H B:CYS34 4.2 0.0 1.0
HB2 B:SER36 4.3 0.0 1.0
CA B:CYS53 4.3 0.0 1.0
H B:CYS60 4.4 0.0 1.0
N B:GLU61 4.4 0.0 1.0
N B:CYS53 4.5 0.0 1.0
H B:CYS37 4.6 0.0 1.0
HA B:CYS34 4.6 0.0 1.0
N B:CYS34 4.7 0.0 1.0
H B:SER36 4.7 0.0 1.0
HB2 B:ALA58 4.8 0.0 1.0
HB2 B:CYS50 4.8 0.0 1.0
H B:VAL54 4.8 0.0 1.0
N B:CYS50 4.8 0.0 1.0
O B:ALA58 4.9 0.0 1.0
HA B:CYS53 4.9 0.0 1.0
H B:LEU35 5.0 0.0 1.0

Reference:

K.J.Walters, K.T.Dayie, R.J.Reece, M.Ptashne, G.Wagner. Structure and Mobility of the PUT3 Dimer. Nat.Struct.Biol. V. 4 744 1997.
ISSN: ISSN 1072-8368
PubMed: 9303003
DOI: 10.1038/NSB0997-744
Page generated: Wed Dec 16 02:44:45 2020

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