Atomistry » Zinc » PDB 12ca-1add » 1a6y
Atomistry »
  Zinc »
    PDB 12ca-1add »
      1a6y »

Zinc in PDB 1a6y: Reverba Orphan Nuclear Receptor/Dna Complex

Protein crystallography data

The structure of Reverba Orphan Nuclear Receptor/Dna Complex, PDB code: 1a6y was solved by Q.Zhao, S.Khorasanizadeh, F.Rastinejad, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 2.30
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 38.670, 45.690, 47.950, 75.16, 80.64, 85.58
R / Rfree (%) 19.2 / 28.8

Other elements in 1a6y:

The structure of Reverba Orphan Nuclear Receptor/Dna Complex also contains other interesting chemical elements:

Iodine (I) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Reverba Orphan Nuclear Receptor/Dna Complex (pdb code 1a6y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Reverba Orphan Nuclear Receptor/Dna Complex, PDB code: 1a6y:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 1a6y

Go back to Zinc Binding Sites List in 1a6y
Zinc binding site 1 out of 4 in the Reverba Orphan Nuclear Receptor/Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Reverba Orphan Nuclear Receptor/Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn550

b:15.3
occ:1.00
SG A:CYS121 2.2 12.5 1.0
SG A:CYS118 2.3 12.7 1.0
SG A:CYS101 2.3 24.5 1.0
SG A:CYS104 2.4 30.0 1.0
CB A:CYS121 3.2 17.6 1.0
CB A:CYS101 3.4 20.5 1.0
CB A:CYS104 3.4 11.7 1.0
CB A:CYS118 3.8 17.1 1.0
N A:CYS104 3.9 14.7 1.0
N A:CYS121 4.0 7.6 1.0
N A:CYS118 4.1 21.9 1.0
CA A:CYS121 4.2 9.7 1.0
NH1 A:ARG150 4.2 2.0 1.0
CA A:CYS104 4.2 18.7 1.0
NH2 A:ARG157 4.3 2.0 1.0
CB A:ASP106 4.3 24.0 1.0
CB A:VAL103 4.4 23.6 1.0
CA A:CYS118 4.5 19.4 1.0
CD A:ARG150 4.6 8.9 1.0
C A:VAL103 4.6 20.0 1.0
O A:CYS118 4.7 8.9 1.0
C A:CYS104 4.7 16.0 1.0
CA A:CYS101 4.8 22.1 1.0
CG1 A:VAL103 4.9 18.9 1.0
C A:CYS118 4.9 13.3 1.0
CA A:VAL103 4.9 32.1 1.0
C A:GLY120 4.9 2.0 1.0
O A:CYS104 5.0 24.9 1.0
N A:ASP106 5.0 20.8 1.0

Zinc binding site 2 out of 4 in 1a6y

Go back to Zinc Binding Sites List in 1a6y
Zinc binding site 2 out of 4 in the Reverba Orphan Nuclear Receptor/Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Reverba Orphan Nuclear Receptor/Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn551

b:33.4
occ:1.00
SG A:CYS143 2.2 18.2 1.0
SG A:CYS137 2.3 29.7 1.0
SG A:CYS153 2.3 15.7 1.0
SG A:CYS156 2.4 39.3 1.0
CB A:CYS153 3.2 17.2 1.0
CB A:CYS143 3.3 32.2 1.0
CB A:CYS137 3.5 35.9 1.0
CB A:CYS156 3.6 16.3 1.0
N A:CYS143 4.1 33.9 1.0
CA A:GLU141 4.2 33.3 1.0
CA A:CYS143 4.3 29.1 1.0
CA A:CYS137 4.4 32.2 1.0
N A:GLU141 4.5 42.4 1.0
N A:CYS156 4.5 23.7 1.0
O A:HOH770 4.6 48.0 1.0
C A:GLU141 4.6 32.9 1.0
N A:LEU138 4.6 37.8 1.0
CA A:CYS156 4.7 24.1 1.0
CA A:CYS153 4.7 25.8 1.0
N A:ASN142 4.7 32.3 1.0
N A:LYS139 4.7 35.6 1.0
O A:LYS139 4.9 34.7 1.0
C A:CYS137 5.0 32.8 1.0

Zinc binding site 3 out of 4 in 1a6y

Go back to Zinc Binding Sites List in 1a6y
Zinc binding site 3 out of 4 in the Reverba Orphan Nuclear Receptor/Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Reverba Orphan Nuclear Receptor/Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn450

b:18.5
occ:1.00
SG B:CYS101 2.2 16.1 1.0
SG B:CYS118 2.3 25.6 1.0
SG B:CYS121 2.3 25.1 1.0
SG B:CYS104 2.4 35.4 1.0
CB B:CYS118 3.1 22.4 1.0
CB B:CYS101 3.1 30.7 1.0
CB B:CYS104 3.5 20.0 1.0
CB B:CYS121 3.5 17.8 1.0
N B:CYS118 3.6 19.5 1.0
N B:CYS104 3.8 29.9 1.0
CA B:CYS118 3.9 15.7 1.0
N B:CYS121 4.2 2.0 1.0
CA B:CYS104 4.2 23.4 1.0
CB B:ASP106 4.3 25.5 1.0
CB B:VAL103 4.4 17.5 1.0
CA B:CYS121 4.5 21.2 1.0
NH1 B:ARG150 4.5 16.6 1.0
C B:CYS118 4.5 12.5 1.0
CA B:CYS101 4.6 28.7 1.0
O B:CYS118 4.7 10.5 1.0
C B:VAL103 4.7 35.9 1.0
CG1 B:VAL103 4.7 13.0 1.0
C B:CYS104 4.7 33.3 1.0
N B:ASP106 4.7 19.6 1.0
C B:ALA117 4.8 29.0 1.0
CA B:VAL103 4.9 28.6 1.0
NH2 B:ARG157 4.9 21.7 1.0
CD B:ARG150 5.0 18.7 1.0
N B:VAL103 5.0 24.1 1.0

Zinc binding site 4 out of 4 in 1a6y

Go back to Zinc Binding Sites List in 1a6y
Zinc binding site 4 out of 4 in the Reverba Orphan Nuclear Receptor/Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Reverba Orphan Nuclear Receptor/Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn451

b:23.1
occ:1.00
SG B:CYS153 2.2 18.9 1.0
SG B:CYS143 2.3 33.5 1.0
SG B:CYS156 2.3 34.2 1.0
SG B:CYS137 2.3 44.2 1.0
CB B:CYS153 2.9 25.6 1.0
CB B:CYS156 3.1 26.9 1.0
CB B:CYS137 3.4 33.4 1.0
CB B:CYS143 3.4 23.3 1.0
N B:CYS156 4.1 21.3 1.0
CA B:CYS156 4.2 26.3 1.0
CA B:GLU141 4.3 16.3 1.0
N B:CYS143 4.3 16.1 1.0
CA B:CYS153 4.4 21.7 1.0
CA B:CYS137 4.4 42.2 1.0
CA B:CYS143 4.5 19.7 1.0
N B:GLU141 4.7 19.2 1.0
N B:ASN142 4.7 19.2 1.0
O B:CYS153 4.8 20.0 1.0
C B:CYS153 4.9 21.1 1.0
C B:GLU141 4.9 15.2 1.0

Reference:

Q.Zhao, S.Khorasanizadeh, Y.Miyoshi, M.A.Lazar, F.Rastinejad. Structural Elements of An Orphan Nuclear Receptor-Dna Complex. Mol.Cell V. 1 849 1998.
ISSN: ISSN 1097-2765
PubMed: 9660968
DOI: 10.1016/S1097-2765(00)80084-2
Page generated: Wed Dec 16 02:44:25 2020

Last articles

Zn in 7L3L
Zn in 7KSO
Zn in 7KSR
Zn in 7KTP
Zn in 7LMM
Zn in 7LMK
Zn in 7LLZ
Zn in 7LLF
Zn in 7L0N
Zn in 7LBR
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy