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Zinc in PDB 1a1t: Structure of the Hiv-1 Nucleocapsid Protein Bound to the SL3 Psi-Rna Recognition Element, uc(Nmr), 25 Structures

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Hiv-1 Nucleocapsid Protein Bound to the SL3 Psi-Rna Recognition Element, uc(Nmr), 25 Structures (pdb code 1a1t). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Hiv-1 Nucleocapsid Protein Bound to the SL3 Psi-Rna Recognition Element, uc(Nmr), 25 Structures, PDB code: 1a1t:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1a1t

Go back to Zinc Binding Sites List in 1a1t
Zinc binding site 1 out of 2 in the Structure of the Hiv-1 Nucleocapsid Protein Bound to the SL3 Psi-Rna Recognition Element, uc(Nmr), 25 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Hiv-1 Nucleocapsid Protein Bound to the SL3 Psi-Rna Recognition Element, uc(Nmr), 25 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn56

b:0.0
occ:1.00
NE2 A:HIS23 2.1 0.0 1.0
SG A:CYS28 2.3 0.0 1.0
SG A:CYS18 2.4 0.0 1.0
SG A:CYS15 2.4 0.0 1.0
H A:CYS18 2.9 0.0 1.0
CE1 A:HIS23 2.9 0.0 1.0
HE1 A:HIS23 3.1 0.0 1.0
HB2 A:CYS28 3.1 0.0 1.0
HB3 A:CYS18 3.1 0.0 1.0
HB3 A:CYS15 3.2 0.0 1.0
CD2 A:HIS23 3.2 0.0 1.0
CB A:CYS15 3.2 0.0 1.0
HB3 A:ASN17 3.2 0.0 1.0
CB A:CYS28 3.3 0.0 1.0
CB A:CYS18 3.3 0.0 1.0
HB2 A:CYS15 3.3 0.0 1.0
HD2 A:HIS23 3.5 0.0 1.0
N A:CYS18 3.8 0.0 1.0
HA A:CYS28 3.8 0.0 1.0
ND1 A:HIS23 4.1 0.0 1.0
HB1 A:ALA30 4.1 0.0 1.0
HB3 A:CYS28 4.1 0.0 1.0
CA A:CYS18 4.1 0.0 1.0
HD21 A:ASN17 4.2 0.0 1.0
H A:GLY19 4.2 0.0 1.0
HB2 A:CYS18 4.2 0.0 1.0
CA A:CYS28 4.2 0.0 1.0
CG A:HIS23 4.2 0.0 1.0
CB A:ASN17 4.3 0.0 1.0
H A:LYS20 4.3 0.0 1.0
HA A:ALA25 4.4 0.0 1.0
H A:ALA30 4.4 0.0 1.0
H A:ASN17 4.4 0.0 1.0
HB2 A:LYS20 4.4 0.0 1.0
HB2 A:ASN17 4.5 0.0 1.0
H A:ARG29 4.6 0.0 1.0
CA A:CYS15 4.7 0.0 1.0
HB3 A:ALA30 4.8 0.0 1.0
HB3 A:LYS20 4.8 0.0 1.0
C A:ASN17 4.8 0.0 1.0
N A:GLY19 4.9 0.0 1.0
HA A:CYS18 4.9 0.0 1.0
CB A:ALA30 5.0 0.0 1.0
HD1 A:HIS23 5.0 0.0 1.0
ND2 A:ASN17 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1a1t

Go back to Zinc Binding Sites List in 1a1t
Zinc binding site 2 out of 2 in the Structure of the Hiv-1 Nucleocapsid Protein Bound to the SL3 Psi-Rna Recognition Element, uc(Nmr), 25 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Hiv-1 Nucleocapsid Protein Bound to the SL3 Psi-Rna Recognition Element, uc(Nmr), 25 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn57

b:0.0
occ:1.00
NE2 A:HIS44 2.1 0.0 1.0
SG A:CYS49 2.3 0.0 1.0
SG A:CYS39 2.3 0.0 1.0
SG A:CYS36 2.4 0.0 1.0
HA A:CYS49 2.8 0.0 1.0
CD2 A:HIS44 3.0 0.0 1.0
H A:CYS39 3.1 0.0 1.0
HB2 A:GLU51 3.1 0.0 1.0
CE1 A:HIS44 3.1 0.0 1.0
HB3 A:CYS36 3.1 0.0 1.0
CB A:CYS36 3.2 0.0 1.0
HD2 A:HIS44 3.2 0.0 1.0
HB3 A:LYS38 3.2 0.0 1.0
CB A:CYS49 3.3 0.0 1.0
HB3 A:CYS39 3.3 0.0 1.0
HB2 A:CYS36 3.3 0.0 1.0
HE1 A:HIS44 3.4 0.0 1.0
CB A:CYS39 3.4 0.0 1.0
CA A:CYS49 3.5 0.0 1.0
HB2 A:CYS49 3.5 0.0 1.0
H A:GLU51 3.5 0.0 1.0
H A:THR50 3.6 0.0 1.0
N A:CYS39 3.7 0.0 1.0
HB2 A:LYS38 4.1 0.0 1.0
N A:THR50 4.1 0.0 1.0
CB A:LYS38 4.1 0.0 1.0
HA A:MET46 4.1 0.0 1.0
C A:CYS49 4.1 0.0 1.0
CB A:GLU51 4.2 0.0 1.0
CA A:CYS39 4.2 0.0 1.0
CG A:HIS44 4.2 0.0 1.0
ND1 A:HIS44 4.2 0.0 1.0
HG21 A:THR50 4.2 0.0 1.0
HB3 A:CYS49 4.3 0.0 1.0
H A:GLY40 4.3 0.0 1.0
HB2 A:CYS39 4.3 0.0 1.0
H A:LYS41 4.3 0.0 1.0
H A:LYS38 4.3 0.0 1.0
N A:GLU51 4.4 0.0 1.0
HB2 A:LYS41 4.5 0.0 1.0
HB3 A:GLU51 4.5 0.0 1.0
H A:ARG52 4.5 0.0 1.0
C A:LYS38 4.6 0.0 1.0
CA A:CYS36 4.6 0.0 1.0
N A:CYS49 4.7 0.0 1.0
O A:GLN45 4.7 0.0 1.0
HG2 A:MET46 4.7 0.0 1.0
CA A:LYS38 4.7 0.0 1.0
HG3 A:GLU51 4.8 0.0 1.0
CA A:GLU51 4.9 0.0 1.0
HB3 A:LYS41 4.9 0.0 1.0
N A:LYS38 4.9 0.0 1.0
HA A:CYS39 5.0 0.0 1.0
N A:GLY40 5.0 0.0 1.0

Reference:

R.N.De Guzman, Z.R.Wu, C.C.Stalling, L.Pappalardo, P.N.Borer, M.F.Summers. Structure of the Hiv-1 Nucleocapsid Protein Bound to the SL3 Psi-Rna Recognition Element. Science V. 279 384 1998.
ISSN: ISSN 0036-8075
PubMed: 9430589
DOI: 10.1126/SCIENCE.279.5349.384
Page generated: Wed Dec 16 02:44:28 2020

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